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Sample GSM1099 Query DataSets for GSM1099
Status Public on Feb 12, 2002
Title cdc15 240 min
Sample type RNA
 
Channel 1
Source name asynchronous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 240 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n101
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 269 272 7316 428 44 388 384 630 72 702 0 0 -6.667 .039 44 13 166.273 101.611 .006 .01 0 1291 45 41 49 64 72 -6.667
2 270 272 5301 410 26 387 384 630 42 672 1.332 0 -6.98 .06 37 4 203.885 126.214 .005 .008 .02 1176 45 40 48 73 81 -6.98
3 268 272 1768 409 25 385 384 630 40 670 .801 0 -5.466 .143 28 4 70.72 44.2 .014 .023 .012 1061 45 40 48 82 90 -5.466
4 268 264 13 376 385 384 630 616 .022 0 1.75 2 0 .031 1061 45 40 48 91 99
5 267 264 67 517 133 383 384 630 218 848 .906 0 1.702 1.258 15 13 .504 .307 1.985 3.254 2.289 1061 45 40 48 100 108 1.702
6 268 272 18 394 10 384 384 630 16 646 .847 0 -.17 1.071 2 2 1.8 1.125 .556 .889 .705 1061 45 40 48 109 117 -.17
7 269 272 153 628 244 383 384 630 400 1030 .823 0 1.386 1 17 13 .627 .383 1.595 2.614 1.349 1061 45 40 48 118 126 1.386
8 269 272 38 429 45 382 384 630 73 703 .951 0 .942 1.276 6 6 .844 .521 1.184 1.921 .875 1061 45 40 48 127 135 .942
9 269 272 11 394 10 382 384 630 16 646 .692 0 .541 1 4 0 1.1 .688 .909 1.455 .45 1061 45 40 48 136 144 .541
10 269 272 4 384 383 384 630 630 .548 0 .65 2 0 .618 1061 45 40 48 145 153
11 269 272 7 382 384 384 630 626 .226 0 1.5 0 0 .332 1061 45 40 48 154 162
12 269 272 385 9 381 376 616 15 631 .324 0 2.333 0 0 .636 1061 45 40 48 163 171
13 271 272 115 794 418 385 376 616 686 1302 .889 0 2.577 2.5 17 17 .275 .168 3.635 5.965 3.596 1061 45 40 48 172 180 2.577
14 271 272 11 392 16 384 376 616 27 643 .649 0 1.295 1 2 2 .688 .407 1.455 2.455 .59 1061 45 40 48 181 189 1.295
15 270 264 27 394 18 383 376 616 30 646 .805 0 .152 1.333 6 6 1.5 .9 .667 1.111 .852 1061 45 40 48 190 198 .152
16 269 264 6 379 3 383 376 616 5 621 -.138 0 -.263 3 0 0 2 1.2 .5 .833 -.238 1061 45 40 48 199 207 -.263
17 268 264 3307 3020 2644 384 376 616 4335 4951 1.258 0 .391 .783 28 24 1.251 .763 .8 1.311 .5 1061 45 40 48 208 216 .391
18 265 264 28 403 27 377 376 616 45 661 .867 0 .684 1.5 6 2 1.037 .622 .964 1.607 .788 1061 45 40 48 217 225 .684
19 265 264 4 385 9 377 376 616 15 631 .113 0 1.907 1 0 0 .444 .267 2.25 3.75 .177 1061 45 40 48 226 234 1.907
20 265 264 24 390 14 377 376 616 23 639 .844 0 -.061 1.125 4 4 1.714 1.043 .583 .958 .932 1061 45 40 48 235 243 -.061

Total number of rows: 8832

Table truncated, full table size 996 Kbytes.




Supplementary data files not provided

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