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Sample GSM1108 Query DataSets for GSM1108
Status Public on Feb 12, 2002
Title cdc15 080 min
Sample type RNA
 
Channel 1
Source name Asynchronous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 80 minutes
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n106
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 374 10073 372 103 269 426 164 590 .63 0 -5.941 0 0 97.796 61.421 .01 .016 63.65 48 55 60 67 -5.941
2 365 10176 361 86 275 436 137 573 .88 0 -6.215 0 0 118.326 74.277 .008 .013 111.57 48 55 69 76 -6.215
3 378 3234 378 112 266 422 178 600 .88 0 -4.183 0 0 28.875 18.169 .035 .055 31.01 48 55 78 85 -4.183
4 339 76 351 87 264 419 138 557 .54 0 .861 0 0 .874 .551 1.145 1.816 .26 48 55 87 94 .861
5 337 189 472 205 267 423 326 749 .96 0 .786 0 0 .922 .58 1.085 1.725 .55 48 55 96 103 .786
6 359 63 344 81 263 417 129 546 .8 0 1.034 0 0 .778 .488 1.286 2.048 .36 48 55 105 112 1.034
7 335 160 470 196 274 434 312 746 .87 0 .963 0 0 .816 .513 1.225 1.95 .31 48 55 114 121 .963
8 345 51 328 59 269 426 94 520 .38 0 .882 0 0 .864 .543 1.157 1.843 .2 48 55 123 130 .882
9 345 52 317 40 277 439 64 503 .02 0 .3 0 0 1.3 .813 .769 1.231 .02 48 55 132 139 .3
10 335 84 349 67 282 447 106 553 .83 0 .336 0 0 1.254 .792 .798 1.262 .61 48 55 141 148 .336
11 351 48 324 58 266 422 92 514 .35 0 .939 0 0 .828 .522 1.208 1.917 .22 48 55 150 157 .939
12 343 53 322 49 273 433 78 511 .66 0 .557 0 0 1.082 .679 .925 1.472 .32 48 55 159 166 .557
13 343 291 509 252 257 407 400 807 .83 0 .459 0 0 1.155 .728 .866 1.375 .53 48 55 168 175 .459
14 321 88 351 76 275 436 121 557 .94 0 .459 0 0 1.158 .727 .864 1.375 .61 48 55 177 184 .459
15 335 69 343 65 278 441 103 544 .71 0 .578 0 0 1.062 .67 .942 1.493 .42 48 55 186 193 .578
16 341 63 334 67 267 423 107 530 .75 0 .764 0 0 .94 .589 1.063 1.698 .47 48 55 195 202 .764
17 326 67 317 60 257 407 96 503 .24 0 .519 0 0 1.117 .698 .896 1.433 .13 47 54 204 211 .519
18 346 103 376 125 251 398 198 596 .9 0 .943 0 0 .824 .52 1.214 1.922 .43 47 54 213 220 .943
19 334 155 428 175 253 401 278 679 .94 0 .843 0 0 .886 .558 1.129 1.794 .48 47 54 222 229 .843
20 343 65 338 73 265 420 116 536 .68 0 .836 0 0 .89 .56 1.123 1.785 .29 47 54 231 238 .836

Total number of rows: 8832

Table truncated, full table size 852 Kbytes.




Supplementary data files not provided

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