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Sample GSM1109 Query DataSets for GSM1109
Status Public on Feb 12, 2002
Title cdc15 220 min
Sample type RNA
 
Channel 1
Source name Asynchromous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 220 minutes
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version unknown scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n105
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 245 7144 349 80 269 389 116 505 .69 0 -5.945 0 0 89.3 61.586 .011 .016 96.57 13 20 64 71 -5.945
2 232 5871 351 84 267 386 122 508 .82 0 -5.589 0 0 69.893 48.123 .014 .021 85.9 13 20 73 80 -5.589
3 232 1691 350 65 285 413 94 507 .76 0 -4.169 0 0 26.015 17.989 .038 .056 35.28 13 20 82 89 -4.169
4 195 66 333 50 283 410 72 482 .1 0 .126 0 0 1.32 .917 .758 1.091 .09 13 20 91 98 .126
5 229 79 481 211 270 391 306 697 .69 0 1.954 0 0 .374 .258 2.671 3.873 .09 13 20 100 107 1.954
6 225 55 352 61 291 421 89 510 .86 0 .694 0 0 .902 .618 1.109 1.618 .44 13 20 109 116 .694
7 216 101 486 211 275 398 306 704 .75 0 1.599 0 0 .479 .33 2.089 3.03 .14 13 20 118 125 1.599
8 226 40 329 55 274 397 79 476 .22 0 .982 0 0 .727 .506 1.375 1.975 .1 13 20 127 134 .982
9 226 54 329 64 265 384 92 476 .54 0 .769 0 0 .844 .587 1.185 1.704 .3 13 20 136 143 .769
10 229 39 318 55 263 381 79 460 .26 0 1.018 0 0 .709 .494 1.41 2.026 .15 13 20 145 152 1.018
11 215 43 326 55 271 392 80 472 .19 0 .896 0 0 .782 .538 1.279 1.86 .17 13 20 154 161 .896
12 214 47 321 47 274 397 68 465 -.01 0 .533 0 0 1 .691 1 1.447 -.01 13 20 163 170 .533
13 215 153 678 395 283 410 572 982 .79 0 1.902 0 0 .387 .267 2.582 3.739 .16 13 20 172 179 1.902
14 215 52 325 58 267 386 85 471 .64 0 .709 0 0 .897 .612 1.115 1.635 .36 13 20 181 188 .709
15 217 66 341 59 282 408 86 494 .54 0 .382 0 0 1.119 .767 .894 1.303 .48 13 20 190 197 .382
16 221 59 339 68 271 392 99 491 .44 0 .747 0 0 .868 .596 1.153 1.678 .26 13 20 199 206 .747
17 210 63 337 67 270 391 97 488 .64 0 .623 0 0 .94 .649 1.063 1.54 .4 13 20 208 215 .623
18 217 72 362 92 270 391 133 524 .66 0 .885 0 0 .783 .541 1.278 1.847 .34 13 20 217 224 .885
19 221 58 338 73 265 384 105 489 .82 0 .856 0 0 .795 .552 1.259 1.81 .51 13 20 226 233 .856
20 223 65 342 70 272 394 101 495 .61 0 .636 0 0 .929 .644 1.077 1.554 .27 13 20 235 242 .636

Total number of rows: 8832

Table truncated, full table size 846 Kbytes.




Supplementary data files not provided

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