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Sample GSM112398 Query DataSets for GSM112398
Status Public on Sep 30, 2006
Title NA07022_Nsp_EA
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Male Cell lot number: 4
Biomaterial provider Coriell NA07022 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA07022
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 05, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3811
Series (1)
GSE5013 Global variation of copy number in the human genome_EA

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotype call
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1825791 AB 0.007813 18.961 0.463997 0.438168
SNP_A-2222671 AA 0.062500 15.090 0.909180 1.000000
SNP_A-1879718 AA 0.007813 5.880 1.000000 0.841806
SNP_A-2192013 BB 0.007813 11.444 0.052842 0.027544
SNP_A-2161785 BB 0.015625 22.932 0.003326 0.025560
SNP_A-1924692 AB 0.007813 9.222 0.632081 0.457094
SNP_A-2059484 AB 0.007813 13.297 0.603858 0.525279
SNP_A-1921272 BB 0.007813 24.186 0.000000 0.000000
SNP_A-2045948 AB 0.007813 13.643 0.376923 0.427656
SNP_A-2024190 AA 0.015625 20.498 1.000000 0.994118
SNP_A-2166839 AA 0.007813 17.085 0.999670 1.000000
SNP_A-1999651 AB 0.007813 13.507 0.572785 0.422346
SNP_A-2049421 BB 0.007813 15.313 0.041329 0.000000
SNP_A-2220047 BB 0.023438 8.009 0.014758 0.182177
SNP_A-1916560 BB 0.007813 30.086 0.000000 0.000000
SNP_A-2094813 AB 0.007813 7.232 0.471770 0.487669
SNP_A-2190792 BB 0.460938 -3.590 0.158223 0.236722
SNP_A-2033074 BB 0.062500 11.690 0.025078 0.186007
SNP_A-2131660 BB 0.187500 6.945 0.323965 0.000000
SNP_A-1780523 AA 0.007813 9.488 1.000000 0.912858

Total number of rows: 267231

Table truncated, full table size 13237 Kbytes.




Supplementary file Size Download File type/resource
GSM112398.CEL.gz 44.1 Mb (ftp)(http) CEL
GSM112398_raw.txt.gz 26.9 Mb (ftp)(http) TXT

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