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GEO accession:
Sample GSM112496
Query DataSets for GSM112496
Status
Public on Sep 30, 2006
Title
NA10835_Nsp_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 4
Biomaterial provider
Coriell NA10835
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10835
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AB
0.007813
12.474
0.331403
0.383617
SNP_A-2222671
AA
0.023438
16.941
0.962010
0.943950
SNP_A-1879718
AA
0.046875
9.341
0.904049
0.923963
SNP_A-2192013
BB
0.007813
10.129
0.071070
0.086266
SNP_A-2161785
AB
0.015625
4.941
0.441930
0.272727
SNP_A-1924692
AA
0.007813
23.318
1.000000
1.000000
SNP_A-2059484
BB
0.023438
22.400
0.020115
0.000000
SNP_A-1921272
AB
0.187500
4.671
0.544379
0.340569
SNP_A-2045948
AB
0.312500
0.685
0.626761
0.237631
SNP_A-2024190
AA
0.023438
14.001
0.978166
1.000000
SNP_A-2166839
AA
0.007813
26.916
1.000000
1.000000
SNP_A-1999651
AA
0.007813
17.373
1.000000
1.000000
SNP_A-2049421
BB
0.007813
21.610
0.000898
0.000000
SNP_A-2220047
AB
0.039063
13.106
0.364169
0.436338
SNP_A-1916560
AB
0.007813
12.587
0.400213
0.415065
SNP_A-2094813
AB
0.007813
9.464
0.470287
0.497129
SNP_A-2190792
AB
0.132813
7.107
0.499527
0.687123
SNP_A-2033074
BB
0.382813
1.914
0.154054
0.279553
SNP_A-2131660
BB
0.132813
6.431
0.178108
0.000000
SNP_A-1780523
AA
0.007813
18.367
1.000000
0.960265
Total number of rows:
267231
Table truncated, full table size
13222 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112496.CEL.gz
43.5 Mb
(ftp)
(http)
CEL
GSM112496_raw.txt.gz
26.3 Mb
(ftp)
(http)
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