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Sample GSM112498 Query DataSets for GSM112498
Status Public on Sep 30, 2006
Title NA10839_Nsp_EA
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 2
Biomaterial provider Coriell NA10839 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10839
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 05, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3811
Series (1)
GSE5013 Global variation of copy number in the human genome_EA

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotype call
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1825791 AA 0.093750 7.819 0.887625 0.961249
SNP_A-2222671 AA 0.007813 5.978 0.895462 0.876686
SNP_A-1879718 AA 0.007813 6.479 0.994160 0.855089
SNP_A-2192013 BB 0.007813 23.521 0.012821 0.000000
SNP_A-2161785 AB 0.015625 8.997 0.561769 0.327103
SNP_A-1924692 AB 0.007813 13.111 0.561983 0.606046
SNP_A-2059484 AA 0.007813 26.011 1.000000 1.000000
SNP_A-1921272 AB 0.132813 4.021 0.468750 0.407227
SNP_A-2045948 BB 0.039063 14.731 0.000000 0.130938
SNP_A-2024190 AA 0.015625 19.653 1.000000 1.000000
SNP_A-2166839 AA 0.007813 27.511 1.000000 1.000000
SNP_A-1999651 AB 0.007813 12.098 0.522887 0.395210
SNP_A-2049421 BB 0.023438 16.290 0.005156 0.000000
SNP_A-2220047 AA 0.007813 13.368 1.000000 0.845794
SNP_A-1916560 AA 0.007813 28.108 1.000000 0.977599
SNP_A-2094813 AB 0.007813 7.233 0.501709 0.505678
SNP_A-2190792 AB 0.007813 10.117 0.591719 0.386010
SNP_A-2033074 BB 0.007813 10.241 0.107856 0.010582
SNP_A-2131660 BB 0.187500 5.803 0.295455 0.022059
SNP_A-1780523 AA 0.007813 15.711 1.000000 0.953651

Total number of rows: 267231

Table truncated, full table size 13212 Kbytes.




Supplementary file Size Download File type/resource
GSM112498.CEL.gz 43.2 Mb (ftp)(http) CEL
GSM112498_raw.txt.gz 26.2 Mb (ftp)(http) TXT

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