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Sample GSM1129994 Query DataSets for GSM1129994
Status Public on Apr 27, 2013
Title hom_CG5508_ovaries_smallRNA
Sample type SRA
Source name ovaries
Organism Drosophila melanogaster
Characteristics tissue: ovaries
age: 3-5 days old flies
strain: homozygous z3-5967 (GC5508 mutant)
Growth protocol Fly stocks were maintained at 25 ÂșC in standard conditions
Extracted molecule total RNA
Extraction protocol total RNA was size selected (19-28nt)
libraries were prepared according (Malone et al. Cold Spring Harb Protoc. 2012 )
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
Description 19-28 nt size fractionated RNA
Data processing clip 3' end adaptor GATCGGTACAGTTGCAGTAAGAGC, keep reads with min length 15nt
collapse reads
remove low-complexity reads and artifacts
map to genome
Genome_build: Release 5 (dm3)
Supplementary_files_format_and_content: tabular files with all mappers, their reads number and genomic annotation
Submission date Apr 26, 2013
Last update date May 15, 2019
Contact name Vasily Vagin
Organization name Cold Spring Harbor
Lab Hannon's
Street address 1 Bungtown Rd
City Cold Spring Harbor
State/province NY
ZIP/Postal code 11724
Country USA
Platform ID GPL9061
Series (2)
GSE46422 Minotaur is critical for primary piRNA biogenesis [smallRNA-Seq]
GSE46424 Minotaur is critical for primary piRNA biogenesis
BioSample SAMN02058430
SRA SRX272101

Supplementary file Size Download File type/resource
GSM1129994_processed_hom_CG5508_ovaries_smallRNA.finalann.txt.gz 14.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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