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GEO accession:
Sample GSM114311
Query DataSets for GSM114311
Status
Public on Jan 01, 2007
Title
CGH_6# vs 8004#_1
Sample type
genomic
Channel 1
Source name
strain 8004# gDNA
Organism
Xanthomonas campestris pv. campestris
Characteristics
Strain 8004#
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
strain 6# gDNA
Organism
Xanthomonas campestris pv. campestris
Characteristics
Strain 6#
Extracted molecule
genomic DNA
Label
Cy3
Description
Comparative genome analysis the genomic diversity and host preferences in Xanthomonas campestris pv. campestris
Data processing
After background correction and removal of bad spots, expression ratio was linear normalized based on the gene XC3300
Submission date
Jun 14, 2006
Last update date
Jun 16, 2006
Contact name
Liang Zhang
E-mail(s)
lzhang@capitalbio.com
Organization name
CapitalBio Corporation
Street address
18 Life Science Parkway,Changping District
City
Beijing
ZIP/Postal code
102206
Country
China
Platform ID
GPL3842
Series (1)
GSE5087
CGH analysis between Xcc strains and transcriptome analysis of Xcc 8004 grown in NYG and XVM2
Data table header descriptions
ID_REF
VALUE
Normalized ratio of expression defined as CH2 divided by CH1
Data table
ID_REF
VALUE
1
0.6129292
2
0.6363425
3
0.6580595
4
1.006517
5
0.9226177
6
1.101005
7
0.05341167
8
0.06181764
9
0.06426691
10
0.7436586
11
0.8264565
12
0.8016259
13
0.7834936
14
0.816209
15
0.7596471
16
0.8453458
17
0.9075714
18
0.8179349
19
0.03576385
20
0.05567734
Total number of rows:
12768
Table truncated, full table size
183 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM114311.gpr.gz
1.0 Mb
(ftp)
(http)
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