GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM114321
Query DataSets for GSM114321
Status
Public on Jan 01, 2007
Title
CGH_10# vs 8004#_1
Sample type
genomic
Channel 1
Source name
strain 8004# gDNA
Organism
Xanthomonas campestris pv. campestris
Characteristics
Strain 8004#
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
strain 10# gDNA
Organism
Xanthomonas campestris pv. campestris
Characteristics
Strain 10#
Extracted molecule
genomic DNA
Label
Cy3
Description
Comparative genome analysis the genomic diversity and host preferences in Xanthomonas campestris pv. campestris
Data processing
After background correction and removal of bad spots, expression ratio was linear normalized based on the gene XC3300
Submission date
Jun 14, 2006
Last update date
Jun 16, 2006
Contact name
Liang Zhang
E-mail(s)
lzhang@capitalbio.com
Organization name
CapitalBio Corporation
Street address
18 Life Science Parkway,Changping District
City
Beijing
ZIP/Postal code
102206
Country
China
Platform ID
GPL3842
Series (1)
GSE5087
CGH analysis between Xcc strains and transcriptome analysis of Xcc 8004 grown in NYG and XVM2
Data table header descriptions
ID_REF
VALUE
Normalized ratio of expression defined as CH2 divided by CH1
Data table
ID_REF
VALUE
1
1.011333
2
0.8973747
3
0.8663101
4
1.198492
5
1.237013
6
1.091465
7
0.04545497
8
0.03473313
9
0.04227063
10
1.35671
11
1.283282
12
1.268213
13
1.117257
14
1.066946
15
1.055526
16
1.09895
17
1.08714
18
1.151381
19
0.04140598
20
0.01972517
Total number of rows:
12768
Table truncated, full table size
179 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM114321.gpr.gz
1.0 Mb
(ftp)
(http)
GPR
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
