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GEO accession:
Sample GSM114335
Query DataSets for GSM114335
Status
Public on Jan 01, 2007
Title
CGH_18# vs 8004#_1
Sample type
genomic
Channel 1
Source name
strain 18# gDNA
Organism
Xanthomonas campestris pv. campestris
Characteristics
Strain 18#
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
strain 8004# gDNA
Organism
Xanthomonas campestris pv. campestris
Characteristics
Strain 8004#
Extracted molecule
genomic DNA
Label
Cy3
Description
Comparative genome analysis the genomic diversity and host preferences in Xanthomonas campestris pv. campestris
Data processing
After background correction and removal of bad spots, expression ratio was linear normalized based on the gene XC3300
Submission date
Jun 14, 2006
Last update date
Jun 16, 2006
Contact name
Liang Zhang
E-mail(s)
lzhang@capitalbio.com
Organization name
CapitalBio Corporation
Street address
18 Life Science Parkway,Changping District
City
Beijing
ZIP/Postal code
102206
Country
China
Platform ID
GPL3842
Series (1)
GSE5087
CGH analysis between Xcc strains and transcriptome analysis of Xcc 8004 grown in NYG and XVM2
Data table header descriptions
ID_REF
VALUE
Normalized ratio of expression defined as CH1 divided by CH2
Data table
ID_REF
VALUE
1
0.5091912
2
0.4923578
3
0.5232957
4
0.9175475
5
1.025113
6
0.9800705
7
0.03116499
8
0.03577975
9
0.0386182
10
0.5934112
11
0.6266656
12
0.6295993
13
0.7843198
14
0.7365711
15
0.730051
16
0.6435198
17
0.6658619
18
0.6543746
19
0.006919448
20
0.01380185
Total number of rows:
12768
Table truncated, full table size
185 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM114335.gpr.gz
1.0 Mb
(ftp)
(http)
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