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GEO accession:
Sample GSM114349
Query DataSets for GSM114349
Status
Public on Jan 01, 2007
Title
CGH_1# vs 8004#_1
Sample type
genomic
Channel 1
Source name
strain 8004# gDNA
Organism
Xanthomonas campestris pv. campestris
Characteristics
Strain 8004#
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
strain 1# gDNA
Organism
Xanthomonas campestris pv. campestris
Characteristics
Strain 1#
Extracted molecule
genomic DNA
Label
Cy3
Description
Comparative genome analysis the genomic diversity and host preferences in Xanthomonas campestris pv. campestris
Data processing
After background correction and removal of bad spots, expression ratio was linear normalized based on the gene XC3300
Submission date
Jun 14, 2006
Last update date
Jun 16, 2006
Contact name
Liang Zhang
E-mail(s)
lzhang@capitalbio.com
Organization name
CapitalBio Corporation
Street address
18 Life Science Parkway,Changping District
City
Beijing
ZIP/Postal code
102206
Country
China
Platform ID
GPL3842
Series (1)
GSE5087
CGH analysis between Xcc strains and transcriptome analysis of Xcc 8004 grown in NYG and XVM2
Data table header descriptions
ID_REF
VALUE
Normalized ratio of expression defined as CH2 divided by CH1
Data table
ID_REF
VALUE
1
1.12
2
1.27
3
1.26
4
0.831
5
0.752
6
0.791
7
0.0643
8
0.0152
9
0.0219
10
0.813
11
0.785
12
0.866
13
0.152
14
0.142
15
0.161
16
1.01
17
0.939
18
0.941
19
1.7
20
1.55
Total number of rows:
12768
Table truncated, full table size
135 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM114349.gpr.gz
1.0 Mb
(ftp)
(http)
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