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Sample GSM11663 Query DataSets for GSM11663
Status Public on May 10, 2004
Title GC2_CT18_3hr Mitomycin C gDNA_2d608_2
Sample type genomic
 
Channel 1
Source name CT18 3hr Mitomycin C gDNA
Organism Salmonella enterica subsp. enterica serovar Typhi
Extracted molecule genomic DNA
 
Channel 2
Source name CT18 log gDNA
Organism Salmonella enterica subsp. enterica serovar Typhi
Extracted molecule genomic DNA
 
 
Description CT18 exposed to 2ug/mL of Mitomycin C for 3hrs copmared to untreated log phase CT18 gDNA. Treated samples labeled with Cy5.
User - FBlackmer
Date_of_Scan = Fri Jan 31 11:08:59 2003
Keywords = Salmonella
 
Submission date Oct 17, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE812 CT18_MitomycinC_2ug/ml_DNA

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2030 21940 273.721741 92.75 281.224609 210.580963 189.990387 11500 50.41066 0.964816 0.992767 0.994339 1.299841 0.346624 430.190735 117.705879 389.762512 208.544647 191.326019 19400 50.41066 0.970265 0.988235 0.994217 2.062823 0.550086 1 1 1 1 1 0 1 1 1 1 1 0 1 180.971741 312.484856 0.002000389 0.003627462 0.551456717 -0.258488569
2 2260 21940 417.867554 85.470589 350.121826 148.41304 190.492355 15100 31.099234 0.960614 0.990578 0.996437 2.815572 0.750819 473.412109 120.220589 568.135803 177.487259 189.822784 16500 31.099234 0.96506 0.990494 0.994942 2.667302 0.711281 1 1 1 1 1 0 1 1 1 1 1 0 1 332.396965 353.19152 0.003674182 0.004100003 0.896141157 -0.047623576
3 2500 21940 1071.60498 104.294121 1040.408203 199.15358 188.813965 20000 21.911783 0.956481 0.971016 0.994835 5.380797 0.83852 1206.883667 147.426468 1353.084106 250.546463 190.32518 23200 21.911783 0.967574 0.961967 0.992554 4.817005 0.835772 1 1 1 1 1 1 1 1 1 1 1 1 1 967.310859 1059.457199 0.010692263 0.012298648 0.869385292 -0.060787711
4 2760 21940 3023.951416 124.544121 4464.021484 247.872528 184.895889 20600 31.099234 0.941954 0.878983 0.993217 12.199623 0.845644 2947.009033 121.985291 4525.565918 178.760361 190.992981 22100 31.099234 0.9687 0.893433 0.995796 16.485808 0.834558 1 1 1 1 1 1 1 1 1 1 1 1 1 2899.407295 2825.023742 0.032048877 0.032794125 0.97727495 -0.009983233
5 3020 21950 1295.166626 54.205883 1758.473999 124.251015 192.487091 19800 39.352787 0.974585 0.947464 0.996307 10.423791 0.831842 1196.119995 108.176468 1546.51001 197.519012 190.992981 20000 39.352787 0.969167 0.953094 0.994255 6.055721 0.834558 1 1 1 1 1 1 1 1 1 1 1 1 1 1240.960743 1087.943527 0.013717079 0.01262933 1.086128807 0.035881332
6 3260 21950 921.965332 129.338242 2431.590576 254.674545 186.097076 20200 29.353121 0.970948 0.966827 0.9935 3.620171 0.822069 826.720398 173.926468 1583.896606 251.081268 190.492355 21100 29.353121 0.967449 0.97142 0.993607 3.292641 0.811058 1 1 1 1 1 1 1 1 1 1 1 1 1 792.62709 652.79393 0.00876138 0.007577921 1.156171995 0.063022446
7 3510 21950 367.762238 91.397057 342.872284 196.472488 189.655014 14300 29.353121 0.959561 0.988007 0.99437 1.871826 0.499153 358.778381 133.411758 334.656769 221.901901 193.312149 18500 29.353121 0.974932 0.989273 0.994003 1.616833 0.431156 1 1 1 1 1 0 1 1 1 1 1 0 1 276.365181 225.366623 0.003054829 0.002616155 1.167678733 0.06732337
8 3740 21950 414.339172 87.764709 359.576416 170.950912 187.460449 17100 9.355933 0.972045 0.988182 0.995239 2.423732 0.646329 433.072174 107.985291 379.294037 169.9189 191.990341 19400 9.355933 0.96724 0.988075 0.995506 2.548699 0.679653 1 1 1 1 1 0 1 1 1 1 1 0 1 326.574463 325.086883 0.003609822 0.003773752 0.956560442 -0.019287583
9 3990 21950 1594.693604 106.382355 2077.215332 215.765427 188.307541 18600 9.355933 0.959249 0.939339 0.99324 7.390867 0.839441 1419.48584 174.661758 2062.93335 306.471069 188.982483 21200 9.355933 0.965717 0.935959 0.991493 4.631712 0.838214 1 1 1 1 1 1 1 1 1 1 1 1 1 1488.311249 1244.824082 0.016451191 0.014450468 1.138453836 0.056315425
10 4260 21960 506.938538 117.058823 530.505188 254.01973 189.822784 17900 30.920044 0.964667 0.983612 0.993553 1.995666 0.532178 669.976196 198.838242 709.867981 348.052917 187.799744 16800 30.920044 0.954251 0.97934 0.990944 1.924926 0.513314 1 1 1 1 1 0 1 1 1 1 1 0 1 389.879715 471.137954 0.004309573 0.005469178 0.787974549 -0.10348781
11 4520 21970 372.179993 104.970589 367.778168 201.069824 186.609512 15000 44.017368 0.959505 0.987534 0.993866 1.850999 0.4936 399.39743 99.323532 329.571686 171.76976 191.49231 15600 44.017368 0.971238 0.991379 0.996002 2.325191 0.620051 1 1 1 1 1 0 1 1 1 1 1 0 1 267.209404 300.073898 0.002953625 0.003483391 0.847916644 -0.07164684
12 4770 21970 261.96402 120.647057 195.330276 229.494949 190.659378 13900 44.017368 0.972972 0.994202 0.993286 1.141481 0.304395 605.493835 183.102936 339.78125 229.947693 176.258484 8100 44.017368 0.934508 0.98838 0.994781 2.633181 0.702182 1 1 1 1 1 0 1 1 1 1 1 0 1 141.316963 422.390899 0.001562061 0.0049033 0.318573308 -0.496790615
13 5000 21960 354.05481 145.911758 269.255188 233.007767 184.205978 14600 21.656708 0.94698 0.991821 0.99398 1.519498 0.405199 395.551727 177.676468 328.029694 278.457397 191.824478 17400 21.656708 0.973521 0.989975 0.992874 1.420511 0.378803 1 1 1 1 1 0 1 1 1 1 1 0 1 208.143052 217.875259 0.002300729 0.002529192 0.909669521 -0.041116356
14 5240 21970 462.049683 77.779411 508.627991 208.748062 185.067963 16100 21.827051 0.953887 0.987389 0.991951 2.213432 0.590249 693.515625 179.941177 560.325867 242.380356 186.268051 12800 21.827051 0.962584 0.981392 0.993324 2.86127 0.763005 1 1 1 1 1 0 1 1 1 1 1 0 1 384.270272 513.574448 0.004247568 0.005961799 0.712464159 -0.147236978
15 5490 21970 2292.229736 96.382355 2015.705688 184.883987 186.950348 20900 21.827051 0.965127 0.940132 0.994621 12.398206 0.841908 2291.118652 94.794121 2198.958252 173.075729 191.990341 23600 21.827051 0.973729 0.945854 0.994492 13.237666 0.832745 1 1 1 1 1 1 1 1 1 1 1 1 1 2195.847381 2196.324531 0.02427201 0.025495906 0.951996346 -0.021364719
16 5740 21970 732.95282 150.191177 653.302368 265.579315 185.239883 21200 21.827051 0.951834 0.981155 0.993141 2.759826 0.735954 804.76825 150.794113 752.192993 336.071625 187.120529 23300 21.827051 0.96431 0.977959 0.989746 2.394633 0.638569 1 1 1 1 1 0 1 1 1 1 1 0 1 582.761643 653.974137 0.006441612 0.007591621 0.848515983 -0.071339973
17 6010 21990 730.018738 121 966.10614 208.541702 185.067963 16000 49.390072 0.957135 0.966904 0.994911 3.500589 0.818201 643.295349 134.985291 844.604553 209.63739 187.460449 19300 49.390072 0.963618 0.971741 0.993874 3.06861 0.802707 1 1 1 1 1 1 1 1 1 1 1 1 1 609.018738 508.310058 0.006731847 0.005900688 1.140858004 0.057231594
18 6270 21970 465.823517 109.838234 450.603546 189.659286 192.487091 17000 44.017368 0.97515 0.986061 0.994164 2.456107 0.654962 518.36084 114.294121 559.45105 213.767563 190.826248 19400 44.017368 0.960083 0.981232 0.994514 2.424881 0.646635 1 1 1 1 1 0 1 1 1 1 1 0 1 355.985283 404.066719 0.003934917 0.004690585 0.838896929 -0.076291395
19 2010 22180 837.797852 82.911766 2113.108887 139.826096 181.244553 18800 35.675186 0.939264 0.976334 0.996376 5.991713 0.852283 878.107788 179.338242 2034.45459 247.451584 188.645309 16700 35.675186 0.968933 0.981949 0.993378 3.548604 0.819775 1 1 1 1 1 1 1 1 1 1 1 1 1 754.886086 698.769546 0.008344206 0.008111626 1.028672413 0.012277093
20 2250 22190 1239.811279 123.176468 1416.743164 334.616547 190.826248 19600 21.911783 0.97387 0.960373 0.994926 3.70517 0.82472 1215.717773 188.764709 1122.595825 232.354279 188.813965 16300 21.911783 0.96741 0.972778 0.993996 5.232173 0.83852 1 1 1 1 1 1 1 1 1 1 1 1 1 1116.634811 1026.953064 0.01234283 0.011921325 1.035357204 0.01509021

Total number of rows: 5184

Table truncated, full table size 1739 Kbytes.




Supplementary data files not provided

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