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Sample GSM11664 Query DataSets for GSM11664
Status Public on May 10, 2004
Title GC2_CT18_3hr Mitomycin C gDNA_2d608_3
Sample type genomic
 
Channel 1
Source name CT18 3hr Mitomycin C gDNA
Organism Salmonella enterica subsp. enterica serovar Typhi
Extracted molecule genomic DNA
 
Channel 2
Source name CT18 log gDNA
Organism Salmonella enterica subsp. enterica serovar Typhi
Extracted molecule genomic DNA
 
 
Description CT18 exposed to 2ug/mL of Mitomycin C for 3hrs copmared to untreated log phase CT18 gDNA. Treated samples labeled with Cy5.
User - FBlackmer
Date_of_Scan = Fri Jan 31 11:08:59 2003
Keywords = Salmonella
 
Submission date Oct 17, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE812 CT18_MitomycinC_2ug/ml_DNA

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 1790 40660 341.768127 91.602943 382.385254 214.435684 183.513474 13800 44.957291 0.951297 0.987221 0.993462 1.593802 0.425014 420.971252 100.161766 401.328735 190.979767 188.138428 17400 44.957291 0.956893 0.986938 0.994263 2.204271 0.587806 1 1 1 1 1 0 1 1 1 1 1 0 1 250.165184 320.809486 0.002403536 0.003252325 0.739020721 -0.131343385
2 2030 40670 338.05368 61.441177 347.487061 137.799911 187.290573 14900 31.034348 0.95876 0.990395 0.995605 2.453221 0.654192 390.291199 126.294121 430.381775 223.157135 194.133713 18200 31.034348 0.977442 0.989456 0.993301 1.748952 0.466387 1 1 1 1 1 0 1 1 1 1 1 0 1 276.612503 263.997078 0.002657636 0.002676368 0.993000885 -0.003050365
3 2270 40670 1042.076538 126.411766 953.294067 178.976624 190.492355 19600 23.270676 0.967618 0.973915 0.995895 5.822417 0.835468 1413.786743 142.029419 1350.267334 255.483093 189.150833 21100 23.270676 0.96638 0.963684 0.993561 5.533778 0.837908 1 1 1 1 1 1 1 1 1 1 1 1 1 915.664772 1271.757324 0.008797519 0.012892912 0.682353161 -0.165990792
4 2530 40680 2649.427246 71.867645 3953.281494 137.843292 191.159576 19900 26.957556 0.968196 0.874123 0.995743 19.220574 0.834255 2868.161621 132.588242 4419.700195 210.468155 190.32518 19800 26.957556 0.970683 0.857498 0.994461 13.627532 0.835772 1 1 1 1 1 1 1 1 1 1 1 1 1 2577.559601 2735.573379 0.024764663 0.02773289 0.892970879 -0.049162704
5 2790 40680 1649.680908 141.75 1942.136719 250.513947 186.438858 18800 36.719425 0.963863 0.930344 0.993172 6.585186 0.842838 1385.846191 159.691177 1911.11792 247.464584 190.32518 22100 36.719425 0.96738 0.939247 0.9925 5.60018 0.835772 1 1 1 1 1 1 1 1 1 1 1 1 1 1507.930908 1226.155014 0.01448789 0.012430601 1.165501974 0.066513014
6 3020 40680 826.118896 133.088242 1738.040161 198.404129 184.551254 18500 17.467209 0.964656 0.963722 0.994522 4.163819 0.837763 931.850525 156.647064 1648.487305 225.74585 186.779999 19400 17.467209 0.961836 0.963097 0.993065 4.127874 0.836811 1 1 1 1 1 1 1 1 1 1 1 1 1 693.030654 775.203461 0.006658496 0.007858913 0.847254122 -0.071986309
7 3290 40680 337.91095 96.176468 356.098083 172.267838 188.138428 14600 36.719425 0.967346 0.988693 0.995262 1.961544 0.523078 422.736572 114.573532 341.195587 202.383209 190.492355 18600 36.719425 0.974822 0.990799 0.994102 2.088793 0.557011 1 1 1 1 1 0 1 1 1 1 1 0 1 241.734482 308.16304 0.002322535 0.003124117 0.743421306 -0.128764996
8 3540 40690 421.45224 94.794121 365.003571 176.289413 185.067963 15700 36.220097 0.956939 0.988663 0.995811 2.390684 0.637516 446.391083 142.397064 431.251434 233.78157 191.326019 20200 36.220097 0.976821 0.98732 0.994759 1.909437 0.509183 1 1 1 1 1 0 1 1 1 1 1 0 1 326.658119 303.994019 0.003138464 0.003081852 1.01836946 0.007905367
9 3770 40690 1086.788208 121.720589 1312.94043 205.748489 189.487106 20300 16.391539 0.960338 0.962601 0.994995 5.28212 0.837296 960.114807 125.764709 1229.809814 222.368134 192.817535 20900 16.391539 0.97272 0.963173 0.994026 4.317682 0.831241 1 1 1 1 1 1 1 1 1 1 1 1 1 965.067619 834.350098 0.009272171 0.008458534 1.096191352 0.039886372
10 4030 40690 624.322388 133.647064 594.281433 224.096771 187.120529 18300 26.273352 0.961707 0.979416 0.993797 2.78595 0.74292 694.237305 162.323532 661.169983 270.593781 187.630173 17700 26.273352 0.960654 0.980736 0.991539 2.565607 0.684162 1 1 1 1 1 0 1 1 1 1 1 0 1 490.675324 531.913773 0.004714308 0.005392473 0.874238506 -0.058370069
11 4290 40700 337.966431 92.911766 325.335297 153.368912 192.982544 14900 38.411907 0.968339 0.991562 0.995506 2.203618 0.587631 367.401093 158.088242 314.363098 273.139435 188.813965 18200 38.411907 0.964311 0.990944 0.992241 1.345105 0.358695 1 1 1 1 1 0 1 1 1 1 1 0 1 245.054665 209.312851 0.002354435 0.002121987 1.109542725 0.04514403
12 4550 40690 335.708344 126.647057 316.435394 220.39035 191.824478 14400 46.189846 0.969656 0.990318 0.994232 1.523244 0.406198 462.836609 131.691177 368.40683 186.209976 191.658463 15300 46.189846 0.970757 0.98925 0.995102 2.485563 0.662817 1 1 1 1 1 0 1 1 1 1 1 0 1 209.061287 331.145432 0.002008618 0.00335711 0.59831763 -0.2230682
13 4780 40690 426.787354 126.382355 367.773712 227.500702 193.476746 17400 26.273352 0.976947 0.988312 0.993645 1.875983 0.500262 479.807129 159.323532 338.714844 242.506287 183.860046 14000 26.273352 0.958997 0.988731 0.992699 1.978535 0.527609 1 1 1 1 1 0 1 1 1 1 1 0 1 300.404999 320.483597 0.00288623 0.003249021 0.888338118 -0.051421702
14 5030 40700 652.189026 121.970589 687.205688 212.778076 189.822784 16400 29.221022 0.968237 0.978851 0.994438 3.065114 0.802571 582.231506 106.602943 589.451477 178.940094 192.982544 20300 29.221022 0.97727 0.979691 0.994057 3.253779 0.809661 1 1 1 1 1 1 1 1 1 1 1 1 1 530.218437 475.628563 0.00509423 0.004821861 1.056486244 0.023863847
15 5270 40700 2234.638428 83.470589 2169.778564 175.460464 189.487106 22400 20.790903 0.965605 0.937515 0.995255 12.735852 0.837296 2468.304688 122.411766 2316.533691 163.186752 192.156067 21000 20.790903 0.971028 0.934212 0.996284 15.125644 0.832444 1 1 1 1 1 1 1 1 1 1 1 1 1 2151.167839 2345.892922 0.020667979 0.02378236 0.869046591 -0.06095694
16 5520 40700 803.474243 238.397064 708.7547 778.387756 184.378693 19400 20.790903 0.948539 0.978607 0.992302 1.032229 0.275261 964.804016 150.382355 800.833069 229.65744 188.307541 19900 20.790903 0.96462 0.973587 0.993317 4.201057 0.838737 1 1 1 1 1 0 1 1 1 1 1 1 1 565.077179 814.421661 0.005429145 0.008256502 0.657560022 -0.182064599
17 5780 40700 848.826599 73.529411 1228.100098 164.525681 186.779999 17300 29.221022 0.962823 0.962288 0.994553 5.159235 0.842218 774.347351 128.720581 992.046936 256.768616 191.990341 19000 29.221022 0.968887 0.968849 0.993355 3.01574 0.800628 1 1 1 1 1 1 1 1 1 1 1 1 1 775.297188 645.62677 0.007448896 0.006545281 1.138055988 0.056163628
18 6020 40710 538.247192 113.823532 597.9021 192.704865 188.307541 17800 28.210649 0.961041 0.97934 0.994095 2.793117 0.744831 599.4021 104.808823 701.101196 180.581177 189.150833 18900 28.210649 0.961774 0.977089 0.994492 3.319294 0.812005 1 1 1 1 1 0 1 1 1 1 1 1 1 424.42366 494.593277 0.004077775 0.005014123 0.813257967 -0.089771674
19 1770 40900 878.03064 91.205879 2353.328857 172.898254 188.307541 19600 40.179176 0.965709 0.978714 0.995041 5.078308 0.839441 790.944458 136.602936 2055.48291 215.569992 190.992981 21600 40.179176 0.971398 0.981598 0.994286 3.669084 0.823605 1 1 1 1 1 1 1 1 1 1 1 1 1 786.824761 654.341522 0.007559651 0.00663363 1.139594875 0.056750488
20 2030 40920 1998.223389 104.029411 2128.80835 192.442505 190.492355 19700 31.034348 0.96623 0.952492 0.994354 10.383483 0.835468 1614.643799 147.529419 1820.260376 252.605972 192.487091 21900 31.034348 0.970296 0.958199 0.992996 6.391946 0.831842 1 1 1 1 1 1 1 1 1 1 1 1 1 1894.193978 1467.11438 0.018199027 0.014873416 1.223594248 0.087637427

Total number of rows: 5184

Table truncated, full table size 1741 Kbytes.




Supplementary data files not provided

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