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Sample GSM11667 Query DataSets for GSM11667
Status Public on May 10, 2004
Title GC2_CT18_3hr Mitomycin C gDNA_2d534_3
Sample type genomic
 
Channel 1
Source name CT18 3hr Mitomycin C gDNA
Organism Salmonella enterica subsp. enterica serovar Typhi
Extracted molecule genomic DNA
 
Channel 2
Source name CT18 log phase gDNA
Organism Salmonella enterica subsp. enterica serovar Typhi
Extracted molecule genomic DNA
 
 
Description CT18 exposed to 2ug/mL Mitomycin C for 3hrs compared to untreated log phase CT18 gDNA. Treated sample labeled with Cy3.
User - Fblackmer
Date_of_Scan = Thu Jan 02 10:10:03 2003
Keywords = Salmonella
 
Submission date Oct 17, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE812 CT18_MitomycinC_2ug/ml_DNA

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2050 40110 11000.32129 74.014709 12395.99414 141.837036 189.990387 22700 36.716648 0.968278 0.614998 0.995834 77.556057 0.702855 4138.388184 77.205879 3239.681396 148.897995 183.166229 18800 36.716648 0.944557 0.916206 0.995827 27.793445 0.848789 1 1 1 0 1 1 1 1 1 1 1 1 1 10926.30658 4061.182305 0.0451911 0.020342682 2.221491698 0.346644695
2 2290 40100 1760.930054 170.117645 1652.1073 289.269104 191.658463 20000 27.865852 0.967011 0.96022 0.990761 6.087515 0.833348 1866.913818 59.294117 1489.488525 126.744667 187.120529 17400 27.865852 0.961499 0.962967 0.996284 14.729723 0.841599 1 1 1 1 1 1 1 1 1 1 1 1 1 1590.812409 1807.619701 0.006579585 0.009054465 0.726667441 -0.138664298
3 2540 40110 9154.661133 103.25 9771.298828 203.637405 191.326019 23000 26.735317 0.975332 0.797302 0.994186 44.955695 0.833953 6150.85791 26.352942 6095.522461 89.542915 187.799744 21100 26.735317 0.962406 0.87191 0.996895 68.691732 0.840364 1 1 1 1 1 1 1 1 1 1 1 1 1 9051.411133 6124.504968 0.03743655 0.030677977 1.220306988 0.086469098
4 2790 40100 4975.62793 97.779411 4232.408203 181.288498 187.120529 22300 27.865852 0.957862 0.905411 0.994492 27.445911 0.841599 4575.930664 84.676468 3607.112549 172.550446 180.187729 20200 27.865852 0.969783 0.919868 0.995613 26.519379 0.854204 1 1 1 1 1 1 1 1 1 1 1 1 1 4877.848519 4491.254196 0.020174735 0.022496936 0.89677702 -0.047315529
5 3040 40100 8257.580078 128.897064 7107.304199 224.954529 186.779999 22400 27.865852 0.959831 0.84359 0.993027 36.707774 0.842218 7184.724609 102.661766 5768.737793 255.935959 185.411636 20700 27.865852 0.958759 0.866249 0.994102 28.072353 0.844706 1 1 1 1 1 1 1 1 1 1 1 1 1 8128.683014 7082.062843 0.033620155 0.035474437 0.947729086 -0.02331579
6 3290 40100 7038.065918 128.514709 6765.99707 196.37114 193.147415 25700 27.865852 0.974637 0.857727 0.994553 35.840633 0.830641 6979.479004 55.10294 5447.535645 131.844116 185.239883 21300 27.865852 0.948901 0.885056 0.996101 52.937357 0.845018 1 1 1 1 1 1 1 1 1 1 1 1 1 6909.551209 6924.376064 0.028577838 0.034684575 0.823935075 -0.084107009
7 3530 40110 7269.383789 154.308823 6722.364258 216.061859 188.307541 21100 16.776241 0.954578 0.858498 0.99456 33.644919 0.839441 5953.866699 91.882355 5347.234375 175.95018 187.120529 21000 16.776241 0.958883 0.882744 0.994514 33.838367 0.841599 1 1 1 1 1 1 1 1 1 1 1 1 1 7115.074966 5861.984344 0.029427882 0.029362997 1.002209751 0.000958624
8 3790 40110 6499.280762 156.867645 6643.636719 257.603546 188.138428 22100 26.735317 0.961908 0.845963 0.992416 25.22978 0.839748 5987.326172 46.161766 5063.307617 116.049606 178.590759 19000 26.735317 0.939666 0.877327 0.996513 51.592818 0.857108 1 1 1 1 1 1 1 1 1 1 1 1 1 6342.413117 5941.164406 0.02623216 0.029759615 0.881468412 -0.054793246
9 4030 40110 6507.868164 161.352936 6493.202148 508.45993 183.513474 21200 16.776241 0.953804 0.860924 0.9795 12.799176 0.848157 4828.778809 159.838242 4457.524414 725.244568 185.925949 19900 16.776241 0.962399 0.893829 0.989182 6.658139 0.843771 1 1 1 1 1 1 1 1 1 1 1 1 1 6346.515228 4668.940567 0.026249126 0.023386976 1.12238222 0.050140778
10 4290 40110 4992 66.161766 4878.645508 214.010498 187.969162 21200 26.735317 0.962851 0.885651 0.992035 23.325959 0.840056 4777.72998 29.558823 4308.249512 100.385735 181.244553 18900 26.735317 0.941237 0.889366 0.997055 47.593714 0.852283 1 1 1 1 1 1 1 1 1 1 1 1 1 4925.838234 4748.171157 0.02037322 0.023783847 0.856599028 -0.067222423
11 4540 40120 5489.967773 97.617645 5499.481445 181.0979 186.950348 21700 29.206997 0.962832 0.872955 0.995682 30.314917 0.841908 4879.730469 36.235294 4391.404297 132.726974 181.595459 19300 29.206997 0.951111 0.899948 0.997055 36.765175 0.851645 1 1 1 1 1 1 1 1 1 1 1 1 1 5392.350128 4843.495175 0.022302709 0.02426133 0.919269835 -0.03655699
12 4780 40120 2156.123291 118.279411 1701.717896 214.646667 187.630173 21100 20.486916 0.956191 0.958672 0.992973 10.044988 0.840672 2962.04834 23.514706 1949.759888 74.025505 176.97937 18600 20.486916 0.945725 0.948296 0.99736 40.013889 0.860038 1 1 1 1 1 1 1 1 1 1 1 1 1 2037.84388 2938.533634 0.008428503 0.014719274 0.572616741 -0.242135959
13 5040 40120 9142.351563 122.602943 8095.837402 283.669403 186.950348 22200 29.206997 0.963568 0.826912 0.990791 32.228896 0.841908 9740.200195 36.205883 7904.694336 98.90815 182.12056 21000 29.206997 0.961417 0.829475 0.996788 98.477226 0.85069 1 1 1 1 1 1 1 1 1 1 1 1 1 9019.74862 9703.994312 0.037305594 0.048607833 0.767481116 -0.114932302
14 5290 40120 4170.839844 73.455879 3606.609619 154.30368 188.982483 20600 29.206997 0.960779 0.919395 0.995461 27.030074 0.838214 4200.831543 53.691177 3085.898926 127.40419 176.619293 18400 29.206997 0.940354 0.923973 0.995758 32.972476 0.860692 1 1 1 1 1 1 1 1 1 1 1 1 1 4097.383965 4147.140366 0.016946741 0.020773251 0.81579629 -0.088418274
15 5540 40120 11351.22754 49.89706 9084.572266 115.800545 188.476501 23300 29.206997 0.955777 0.809715 0.996635 98.023956 0.839134 8679.564453 66.852943 6251.538574 177.279373 178.41243 21600 29.206997 0.938871 0.862381 0.995827 48.95981 0.857432 1 1 1 1 1 1 1 1 1 1 1 1 1 11301.33048 8612.71151 0.046742195 0.043141539 1.083461472 0.034813472
16 5790 40120 5554.995605 92.073532 5122.667969 245.155716 191.159576 23100 29.206997 0.975421 0.892151 0.992668 22.65905 0.834255 5898.17627 51.720589 4723.025391 130.140671 185.067963 20400 29.206997 0.951401 0.895576 0.99604 45.321545 0.845331 1 1 1 1 1 1 1 1 1 1 1 1 1 5462.922073 5846.455681 0.022594594 0.029285213 0.771535904 -0.112643859
17 6040 40130 4738.099609 47.867645 4153.769043 109.440216 182.992371 19100 34.515507 0.943067 0.902115 0.996414 43.293953 0.849105 4981.116699 86.191177 4606.883301 252.821106 185.583237 19700 34.515507 0.952207 0.887253 0.993584 19.70214 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 4690.231964 4894.925522 0.019398755 0.024518947 0.791174045 -0.101727969
18 6290 40120 5470.383789 35.220589 3910.922607 83.07843 186.779999 21100 29.206997 0.959112 0.913116 0.997543 65.846018 0.842218 5584.047852 18.161764 3885.739014 56.232887 184.033096 21000 29.206997 0.949466 0.908791 0.998131 99.302172 0.847213 1 1 1 1 1 1 1 1 1 1 1 1 1 5435.1632 5565.886088 0.022479783 0.027879825 0.80631005 -0.093497927
19 2050 40350 3850.208496 127.485291 3493.76001 316.393219 189.655014 21100 37.547844 0.96802 0.915474 0.992241 12.169061 0.836991 3218.965332 90.5 2883.029785 152.086731 186.268051 20200 37.547844 0.95305 0.930954 0.996124 21.165327 0.843149 1 1 1 1 1 1 1 1 1 1 1 1 1 3722.723205 3128.465332 0.015397148 0.015670652 0.982546691 -0.007646803
20 2290 40350 6935.942871 104.264709 6961.581543 231.515289 188.476501 21000 27.865852 0.969964 0.850021 0.992447 29.958898 0.839134 6109.742188 46.073528 5562.036621 102.721519 184.378693 19400 27.865852 0.958554 0.871841 0.996925 59.478698 0.846584 1 1 1 1 1 1 1 1 1 1 1 1 1 6831.678162 6063.66866 0.028255756 0.030373245 0.930284392 -0.031384266

Total number of rows: 5184

Table truncated, full table size 1751 Kbytes.




Supplementary data files not provided

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