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Sample GSM11678 Query DataSets for GSM11678
Status Public on May 10, 2004
Title GC2_DT104_3hr H2O2_2d663_2
Sample type genomic
 
Channel 1
Source name DT104 2hr H2O2 gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name DT104 log phase gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description DT104 exposed to 2mM H2O2 for 3hr compared to DT104 untreated log phase gDNA. Treated sample labeled with Cy3.
User - Fblackmer
Date_of_Scan = Tue Feb 04 13:56:30 2003
Keywords = Salmonella
 
Submission date Oct 17, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE813 DT104_hydrogen_peroxide_2mM_DNA

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2130 22290 13259.4502 48.455883 15234.96191 110.826805 189.150833 24200 24.203163 0.966486 0.521095 0.996719 119.641184 0.595537 16186.9834 125.823532 17381.92578 295.923645 189.990387 24400 24.203163 0.963358 0.500092 0.990746 54.699865 0.571533 1 1 1 0 1 1 1 1 1 0 1 1 1 13210.99431 16061.15987 0.032222396 0.019766909 1.630118056 0.212219058
2 2380 22280 2212.409912 255.132355 2276.22168 913.805542 179.834061 20000 16.960062 0.951689 0.951965 0.972565 2.421095 0.645625 3250.926514 153.147064 3245.762207 236.610535 190.157852 21800 16.960062 0.966987 0.921257 0.994003 13.739568 0.836077 1 1 1 1 1 0 1 1 1 1 1 1 1 1957.277557 3097.77945 0.004773916 0.003812522 1.25216736 0.097662379
3 2630 22280 16264.18945 109.220589 15306.375 199.418167 185.067963 23200 16.960062 0.952617 0.710747 0.994614 81.558214 0.807164 30687.42188 136.632355 30648.32031 237.193344 189.319046 25400 16.960062 0.965354 0.500061 0.993401 129.377247 0.571498 1 1 1 1 1 1 1 1 1 0 1 1 1 16154.96886 30550.78952 0.039402924 0.037599694 1.047958644 0.020344144
4 2880 22280 6479.822754 95.235291 5634.091309 193.286591 187.460449 22000 16.960062 0.965075 0.877716 0.995316 33.52443 0.840981 13303.80078 248.897064 11536.2666 485.565125 188.645309 23100 16.960062 0.969104 0.771461 0.986725 27.398592 0.838827 1 1 1 1 1 1 1 1 1 1 1 1 1 6384.587463 13054.90372 0.015572386 0.016067028 0.96921388 -0.013580375
5 3140 22280 14115.06738 105.661766 13533.39258 217.735336 192.156067 23700 10.598871 0.970055 0.7351 0.994057 64.826719 0.8234 25368.6875 150.294113 26198.1875 288.297852 190.157852 26500 10.598871 0.971463 0.50013 0.990639 87.994716 0.571577 1 1 1 1 1 1 1 1 1 0 1 1 1 14009.40562 25218.39339 0.034169768 0.031036968 1.10093772 0.041762752
6 3380 22270 11818.25488 127.441177 10479.45606 212.946594 189.150833 22400 13.765692 0.963363 0.791321 0.994308 55.49868 0.837908 24362.81055 204.676468 24380.64844 348.841003 188.982483 25400 13.765692 0.963686 0.542198 0.990158 69.839297 0.619655 1 1 1 1 1 1 1 1 1 0 1 1 1 11690.81371 24158.13408 0.028514586 0.029732077 0.959051237 -0.01815819
7 3630 22270 12564.84668 130.514709 11672.15625 278.788757 186.950348 24100 13.765692 0.968329 0.775131 0.991631 45.069417 0.841908 27852.6543 289.205872 26760.78516 459.668793 185.411636 25200 13.765692 0.962418 0.500809 0.98542 60.592876 0.572353 1 1 1 1 1 1 1 1 1 0 1 1 1 12434.33197 27563.44843 0.030328071 0.033923091 0.894024385 -0.048650635
8 3880 22270 12124.26758 158.044113 11758.13574 321.64566 191.326019 25000 13.765692 0.970796 0.766464 0.990189 37.694485 0.833953 27491.05469 281.382355 24239.10352 393.92981 183.513474 23600 13.765692 0.961065 0.538223 0.989182 69.786683 0.615112 1 1 1 1 1 1 1 1 1 0 1 1 1 11966.22347 27209.67233 0.029186326 0.033487689 0.871553907 -0.059705746
9 4130 22270 10602.36621 130.838242 9996.592773 245.588699 185.411636 25100 13.765692 0.955948 0.803154 0.994385 43.17123 0.844706 25453.31836 324.323517 20450.10547 349.587799 180.716904 22300 13.765692 0.950333 0.593918 0.990753 72.809516 0.678763 1 1 1 1 1 1 1 1 1 0 1 1 1 10471.52797 25128.99484 0.025540676 0.030926942 0.825839016 -0.083104603
10 4380 22260 11171.05176 154.985291 9912.498047 210.906815 187.630173 23100 17.068827 0.960395 0.790024 0.994942 52.966765 0.840672 32176.63477 324 24854.08203 415.81842 176.97937 20800 17.068827 0.923675 0.503494 0.986984 77.381456 0.575422 1 1 1 1 1 1 1 1 1 0 1 1 1 11016.06647 31852.63477 0.026868837 0.03920191 0.685396122 -0.164058357
11 4630 22260 14922.11719 142.029419 13339.92481 213.559525 187.969162 23800 17.068827 0.969967 0.720207 0.995293 69.87334 0.813471 30910.34766 174.073532 30028.62109 264.230408 190.157852 26800 17.068827 0.970187 0.500336 0.993027 116.982553 0.571812 1 1 1 1 1 1 1 1 1 0 1 1 1 14780.08777 30736.27412 0.036049508 0.037827975 0.952985405 -0.020913751
12 4880 22260 5840.774414 108.808823 5018.257324 222.419617 188.813965 23500 17.068827 0.958136 0.885841 0.993584 26.260159 0.83852 12007.81152 247.955887 10780.24023 363.578979 188.645309 24900 17.068827 0.969392 0.765831 0.989357 33.026694 0.838827 1 1 1 1 1 1 1 1 1 1 1 1 1 5731.965591 11759.85564 0.013980603 0.014473176 0.965966447 -0.015037959
13 5140 22260 15954.49805 140.5 14658.78223 327.518066 189.150833 23900 10.772058 0.9645 0.706993 0.991936 48.713337 0.804662 32610.78125 168.132355 30103.39063 251.496048 191.49231 25100 10.772058 0.968764 0.500778 0.992371 129.667172 0.572318 1 1 1 1 1 1 1 1 1 0 1 1 1 15813.99805 32442.6489 0.038571276 0.039928057 0.966019363 -0.015014168
14 5390 22260 9406.734375 148.323532 8869.760742 304.195068 185.583237 22600 10.772058 0.956247 0.812088 0.990402 30.923363 0.844394 22673.38086 229.779419 22625.43359 433.179138 190.659378 24700 10.772058 0.968163 0.535774 0.988541 52.341812 0.612313 1 1 1 1 1 1 1 1 1 0 1 1 1 9258.410843 22443.60144 0.022581811 0.027621955 0.817531242 -0.087495642
15 5640 22260 21848.44336 255.411758 20416.81445 841.834229 190.492355 26400 10.772058 0.969412 0.620651 0.977554 25.95338 0.709316 33839.15625 263.073517 30584.94531 729.547485 190.992981 27300 10.772058 0.96556 0.500107 0.986267 46.383761 0.571551 1 1 1 0 1 1 1 1 1 0 1 1 1 21593.0316 33576.08273 0.05266668 0.041323005 1.274512359 0.105344051
16 5890 22260 11264.50586 194.191177 10089.05664 379.639557 188.307541 24100 10.772058 0.96335 0.80452 0.987511 29.671581 0.839441 27173.80664 226.911758 23486.9375 361.027008 189.655014 24400 10.772058 0.965567 0.546455 0.98996 75.268071 0.62452 1 1 1 1 1 1 1 1 1 0 1 1 1 11070.31468 26946.89488 0.027001152 0.033164282 0.814163625 -0.089288305
17 6140 22260 8376.533203 116.617645 7619.020996 233.555588 185.925949 22300 10.772058 0.966142 0.837952 0.993057 35.865266 0.843771 19674.18945 146.838242 19990.66016 277.162292 190.492355 25900 10.772058 0.965205 0.587448 0.993217 70.984365 0.671369 1 1 1 1 1 1 1 1 1 0 1 1 1 8259.915558 19527.35121 0.020146422 0.024032846 0.838286992 -0.076607273
18 6390 22260 10229.625 60.382355 8439.625 125.647339 180.364288 22400 10.772058 0.939089 0.825699 0.996681 81.415373 0.853883 22879.45898 168.926468 21755.57617 398.68811 186.779999 26100 10.772058 0.967141 0.584541 0.991913 57.386861 0.668047 1 1 1 1 1 1 1 1 1 0 1 1 1 10169.24265 22710.53252 0.024803384 0.027950475 0.887404751 -0.05187825
19 2140 22530 4045.515381 55.955883 3485.185059 133.181107 184.033096 19600 10.598871 0.938616 0.919899 0.996033 30.376046 0.847213 7215.151855 41.411766 6822.811523 96.106476 186.097076 21700 10.598871 0.954721 0.848679 0.997498 75.074565 0.84346 1 1 1 1 1 1 1 1 1 1 1 1 1 3989.559498 7173.740089 0.009730771 0.008828918 1.102147616 0.042239766
20 2390 22530 8748.323242 66.470589 8932.390625 146.0159 186.950348 20100 10.598871 0.966295 0.810562 0.995827 59.913498 0.841908 14063.9375 100.058823 16760.91406 182.050659 188.476501 24000 10.598871 0.956536 0.634247 0.995384 77.252879 0.724854 1 1 1 1 1 1 1 1 1 0 1 1 1 8681.852653 13963.87868 0.021175552 0.017185728 1.232159135 0.090666801

Total number of rows: 5184

Table truncated, full table size 1757 Kbytes.




Supplementary data files not provided

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