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Sample GSM116891 Query DataSets for GSM116891
Status Public on Sep 30, 2006
Title NA07000_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 5
Biomaterial provider Coriell NA07000 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA07000
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 29, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.007813 23.605 0.079439 0.000000
SNP_A-1780618 AA 0.132813 3.757 0.687500 0.857266
SNP_A-1780632 AA 0.007813 16.927 0.972580 0.878587
SNP_A-1780654 AA 0.007813 20.900 1.000000 0.916137
SNP_A-4192495 AA 0.007813 11.931 1.000000 0.988898
SNP_A-4192498 AB 0.149414 3.323 0.329493 0.397250
SNP_A-1780732 AB 0.078125 5.194 0.587477 0.369861
SNP_A-1780848 BB 0.062500 7.555 0.024102 0.184966
SNP_A-1780985 BB 0.007813 10.919 0.000000 0.000000
SNP_A-1781022 AA 0.125000 7.295 1.000000 0.664590
SNP_A-1781076 AB 0.007813 11.369 0.641667 0.575200
SNP_A-1781249 AB 0.007813 5.896 0.617998 0.534267
SNP_A-1781276 AA 0.023438 3.785 0.784822 0.874613
SNP_A-1781302 BB 0.023438 11.012 0.107264 0.036119
SNP_A-1781510 AA 0.023438 32.047 0.923885 1.000000
SNP_A-4192564 BB 0.039063 15.544 0.006389 0.203911
SNP_A-1781614 BB 0.039063 5.763 0.063333 0.214849
SNP_A-1781633 AA 0.007813 21.977 1.000000 0.994118
SNP_A-1781764 AB 0.007813 15.320 0.491284 0.467105
SNP_A-1781829 AA 0.007813 12.922 0.968617 0.867406

Total number of rows: 262264

Table truncated, full table size 12968 Kbytes.




Supplementary file Size Download File type/resource
GSM116891.CEL.gz 43.3 Mb (ftp)(http) CEL
GSM116891.raw.txt.gz 26.2 Mb (ftp)(http) TXT

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