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Sample GSM116894 Query DataSets for GSM116894
Status Public on Sep 30, 2006
Title NA07029_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Male Cell lot number: A1
Biomaterial provider Coriell NA07029 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA07029
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 29, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.007813 13.305 0.078801 0.020627
SNP_A-1780618 AB 0.062500 4.602 0.472652 0.357143
SNP_A-1780632 AA 0.007813 10.143 0.915195 0.957672
SNP_A-1780654 AA 0.007813 23.076 0.991402 0.994772
SNP_A-4192495 AB 0.015625 3.908 0.621622 0.417303
SNP_A-4192498 AB 0.519531 -1.641 0.050633 0.399093
SNP_A-1780732 AB 0.046875 4.947 0.561983 0.485522
SNP_A-1780848 BB 0.062500 3.720 0.000000 0.189971
SNP_A-1780985 BB 0.007813 10.349 0.000000 0.000000
SNP_A-1781022 AA 0.007813 10.920 1.000000 1.000000
SNP_A-1781076 AB 0.007813 6.901 0.452690 0.583969
SNP_A-1781249 AB 0.039063 7.041 0.456122 0.472740
SNP_A-1781276 AA 0.062500 10.897 0.921560 0.879121
SNP_A-1781302 BB 0.007813 19.595 0.038288 0.045455
SNP_A-1781510 AA 0.007813 26.535 0.976889 1.000000
SNP_A-4192564 BB 0.039063 12.324 0.011965 0.000000
SNP_A-1781614 BB 0.007813 10.109 0.046001 0.193333
SNP_A-1781633 AB 0.007813 17.283 0.461281 0.431694
SNP_A-1781764 AB 0.007813 15.035 0.527590 0.457812
SNP_A-1781829 AA 0.007813 9.624 0.933744 0.838216

Total number of rows: 262264

Table truncated, full table size 12953 Kbytes.




Supplementary file Size Download File type/resource
GSM116894.CEL.gz 43.6 Mb (ftp)(http) CEL
GSM116894.raw.txt.gz 26.4 Mb (ftp)(http) TXT

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