NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM11820 Query DataSets for GSM11820
Status Public on May 10, 2004
Title GC2_TAQ100F2_3hr Mitomycin C_2d668_1
Sample type genomic
 
Channel 1
Source name TAQ100F2 3hr Mitomycin C gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name TAQ100F2 3hr untreated gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description TAQ100F2 treated with 2ug/mL Mitomycin C for 3hrs compared to 3hr untreated TAQ100F2 gDNA.
User - FBlackmer
Date_of_Scan = Wed Feb 12 10:57:24 2003
 
Submission date Oct 20, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE818 TAQ100F2_mitomycinC_2ug/ml_DNA

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2560 3210 3041.882324 24.367647 3618.600586 121.45153 168.31395 17000 17.286913 0.916972 0.885094 0.995522 25.04606 0.875793 4795.08252 44.985294 5350.970703 138.842178 178.768906 19400 17.286913 0.943811 0.823967 0.994919 34.536209 0.856784 1 1 1 1 1 1 1 1 1 1 1 1 1 3017.514677 4750.097226 112.7752688 101.6166278 1.109811172 0.045249092
2 2820 3220 555.190063 6.147059 508.222931 35.929146 163.712234 12100 22.168222 0.898178 0.985016 0.999084 15.452359 0.88416 1292.951416 49.426472 1038.805298 145.804947 172.793152 14400 22.168222 0.945992 0.971252 0.995567 8.867679 0.867649 1 1 1 1 1 1 1 1 1 1 1 1 1 549.043004 1243.524944 20.51969219 26.60215262 0.771354577 -0.112745939
3 3070 3220 2969.537598 24.044117 1837.1698 74.24836 169.632599 16000 22.168222 0.923419 0.953529 0.997444 39.994656 0.873395 3839.675049 54.132355 3228.693848 121.496132 186.779999 19700 22.168222 0.963787 0.925262 0.996925 31.60327 0.842218 1 1 1 1 1 1 1 1 1 1 1 1 1 2945.493481 3785.542694 110.0835802 80.98235986 1.359352585 0.133332117
4 3320 3210 1235.601196 16.029411 875.516785 60.721771 183.513474 16300 25.289909 0.954525 0.974373 0.99836 20.34857 0.848157 2008.892334 30.382353 1601.30957 90.779381 182.469788 19500 25.289909 0.946467 0.962029 0.996941 22.12939 0.850055 1 1 1 1 1 1 1 1 1 1 1 1 1 1219.571785 1978.509981 45.57974048 42.32534678 1.076889948 0.032171323
5 3570 3220 3058.541748 36 1905.67981 128.388641 171.869614 16800 22.168222 0.907542 0.951523 0.996964 23.822526 0.869328 3945.070801 48.573528 3057.08667 126.810982 179.124664 19800 22.168222 0.926491 0.93119 0.996147 31.109851 0.856137 1 1 1 1 1 1 1 1 1 1 1 1 1 3022.541748 3896.497273 112.9631483 83.35595973 1.355189823 0.132000132
6 3810 3210 2369.875 17.32353 1488.67688 56.298893 170.007477 16000 17.286913 0.943567 0.959984 0.998055 42.094522 0.872714 3123.0625 71.661766 2445.566162 142.443146 183.860046 19200 17.286913 0.958356 0.94368 0.996422 21.924976 0.847527 1 1 1 1 1 1 1 1 1 1 1 1 1 2352.55147 3051.400734 87.92322583 65.27720126 1.346920887 0.129342088
7 4060 3210 2019.379517 37.205883 1383.487549 95.013359 169.444855 16600 17.286913 0.915649 0.961639 0.997696 21.253638 0.873737 2900.432861 96.279411 2403.492188 178.99028 187.290573 20100 17.286913 0.954432 0.944305 0.99514 16.204415 0.84129 1 1 1 1 1 1 1 1 1 1 1 1 1 1982.173634 2804.15345 74.08088719 59.98795474 1.234929371 0.09164212
8 4310 3220 1777.039063 7.911765 1275.716309 34.339279 179.302277 17900 12.2755 0.929548 0.967628 0.999069 51.749457 0.855814 3019.863037 56.176472 2350.027588 141.099304 183.166229 19000 12.2755 0.960163 0.946632 0.995468 21.402395 0.848789 1 1 1 1 1 1 1 1 1 1 1 1 1 1769.127298 2963.686565 66.11858696 63.40077271 1.04286721 0.018229013
9 4560 3220 2006.770142 24.029411 1466.509644 82.707352 183.339935 17400 12.2755 0.94458 0.963776 0.996994 24.263504 0.848473 2868.876953 85.5 2308.255859 177.89856 183.166229 19500 12.2755 0.958777 0.943275 0.994545 16.126477 0.848789 1 1 1 1 1 1 1 1 1 1 1 1 1 1982.740731 2783.376953 74.10208162 59.54349277 1.244503441 0.094996102
10 4810 3220 1508.759521 27.588236 1090.886597 101.514244 170.007477 15800 12.2755 0.913232 0.969925 0.995964 14.86254 0.872714 2106.86792 38.691177 1738.674194 119.695915 184.205978 19700 12.2755 0.941164 0.957802 0.997787 17.601836 0.846898 1 1 1 1 1 1 1 1 1 1 1 1 1 1481.171285 2068.176743 55.35664535 44.24354625 1.251180116 0.097319834
11 5060 3230 1791.797363 20.838236 1118.792969 118.037132 173.161194 15300 14.231603 0.898331 0.969551 0.999046 15.179947 0.86698 2365.144287 61.882355 1940.707886 156.142548 186.779999 20100 14.231603 0.955162 0.950989 0.996597 15.14734 0.842218 1 1 1 1 1 1 1 1 1 1 1 1 1 1770.959127 2303.261932 66.18704893 49.27261471 1.34328266 0.128167408
12 5310 3230 923.83429 39.029411 717.175903 123.684235 180.010986 17500 14.231603 0.932261 0.979774 0.996086 7.469297 0.854526 1807.908569 65.176468 1332.383545 202.856979 187.290573 19700 14.231603 0.960632 0.964943 0.994301 8.912233 0.84129 1 1 1 1 1 1 1 1 1 1 1 1 1 884.804879 1742.732101 33.0683091 37.2814599 0.886990724 -0.052080922
13 5560 3230 2918.483398 31.397058 2097.248535 94.144081 177.518127 18200 14.231603 0.921153 0.94548 0.997658 31.000179 0.859058 4757.29541 71.279411 3671.912109 174.894928 177.159134 19300 14.231603 0.930933 0.919418 0.99334 27.200877 0.859711 1 1 1 1 1 1 1 1 1 1 1 1 1 2887.08634 4686.015999 107.9006974 100.2457678 1.076361623 0.031958205
14 5810 3230 1647.769653 13.882353 1110.265015 68.11985 172.054718 16500 14.231603 0.926987 0.969788 0.997215 24.189273 0.868991 2782.344727 79 2344.937744 149.81102 187.799744 20600 14.231603 0.959552 0.947426 0.995407 18.572364 0.840364 1 1 1 1 1 1 1 1 1 1 1 1 1 1633.8873 2703.344727 61.06418665 57.83140046 1.055900188 0.023622867
15 6060 3230 4130.439941 27.779411 2737.391846 97.485985 172.239624 19100 14.231603 0.924996 0.931633 0.996574 42.369577 0.868655 4988.995605 68.779411 4074.584717 199.584702 188.476501 22800 14.231603 0.962334 0.914566 0.995636 24.996884 0.839134 1 1 1 1 1 1 1 1 1 1 1 1 1 4102.66053 4920.216194 153.3310335 105.255904 1.456745205 0.163383597
16 6310 3230 1892.526001 18.897058 1396.99707 60.620705 173.894928 17300 14.231603 0.920525 0.965988 0.9981 31.219136 0.865646 3430.528809 69.926468 2735.303711 169.528076 185.067963 20800 14.231603 0.962079 0.938957 0.996597 20.235756 0.845331 1 1 1 1 1 1 1 1 1 1 1 1 1 1873.628943 3360.602341 70.02418556 71.89180789 0.974021764 -0.011431339
17 6550 3240 1316.243408 22.455883 1091.818481 72.388962 173.161194 15200 17.710079 0.912276 0.971626 0.997528 18.18293 0.86698 1881.533936 89.132355 1661.716431 201.356964 185.239883 20600 17.710079 0.954937 0.958458 0.993729 9.34427 0.845018 1 1 1 1 1 1 1 1 1 1 1 1 1 1293.787525 1792.401581 48.35344696 38.34401606 1.261042841 0.100729841
18 6810 3240 1559.203369 23.25 1199.404663 71.98349 179.124664 17700 21.316404 0.932912 0.971085 0.997749 21.660569 0.856137 2482.274658 84.602943 1961.306152 186.11377 184.033096 22200 21.316404 0.952726 0.955757 0.99369 13.337405 0.847213 1 1 1 1 1 1 1 1 1 1 1 1 1 1535.953369 2397.671715 57.4040469 51.29227943 1.1191557 0.048890511
19 2560 3450 1228.614258 13.382353 890.827271 46.673855 157.771469 14000 25.435934 0.917239 0.973198 0.998451 26.323394 0.894961 2054.921631 72.514709 1582.453491 176.317856 179.302277 16600 25.435934 0.95249 0.958038 0.994881 11.654643 0.855814 1 1 1 1 1 1 1 1 1 1 1 1 1 1215.231905 1982.406922 45.41754371 42.40871223 1.070948428 0.029768558
20 2810 3460 2982.805664 24.338236 2315.861816 82.584488 171.127197 13900 17.286913 0.906908 0.946045 0.998077 36.118232 0.870678 4002.64917 61.323528 3654.819336 158.593582 179.124664 17100 17.286913 0.94843 0.915848 0.995461 25.238406 0.856137 1 1 1 1 1 1 1 1 1 1 1 1 1 2958.467428 3941.325642 110.5684628 84.31495225 1.311374316 0.117726674

Total number of rows: 5184

Table truncated, full table size 1735 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap