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Sample GSM11824 Query DataSets for GSM11824
Status Public on May 10, 2004
Title GC2_TAQ100F2_3hr Mitomycin C_2d669_1
Sample type genomic
 
Channel 1
Source name TAQ100F2 3hr Mitomycin C gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name TAQ100F2 3hr untreated gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description TAQ100F2 exposed to 2ug/mL Mitomycin C for 3hrs compared to untreated 3hr TAQ100F2 gDNA. Treated sample labeled with Cy3.
User - FBlackmer
Date_of_Scan = Wed Feb 12 11:25:23 2003
 
Submission date Oct 20, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE818 TAQ100F2_mitomycinC_2ug/ml_DNA

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 3100 4060 3693.300537 80.808823 4002.03125 196.736755 185.067963 20300 43.13036 0.949051 0.871002 0.993645 18.772804 0.845331 4292.888672 63.926472 5245.846191 166.598846 180.89296 20700 43.13036 0.953228 0.841545 0.994194 25.767818 0.852922 1 1 1 1 1 1 1 1 1 1 1 1 1 3612.491714 4228.9622 81.10177415 49.38794065 1.642137192 0.215409437
2 3350 4060 684.782593 94.176468 569.139587 248.618866 181.77066 16100 43.13036 0.941798 0.983704 0.992897 2.754347 0.734492 1279.537476 27.67647 1016.642456 108.265625 180.54068 16000 43.13036 0.948 0.971352 0.998489 11.818502 0.853562 1 1 1 1 1 0 1 1 1 1 1 1 1 590.606125 1251.861006 13.25932579 14.61986041 0.906939288 -0.042421784
3 3600 4060 2951 95.191177 2093.296875 286.159027 179.124664 17300 43.13036 0.937738 0.939911 0.994766 10.312448 0.856137 4525.388184 74.617645 3316.44165 194.05954 175.534622 18800 43.13036 0.953362 0.914291 0.99469 23.319586 0.862664 1 1 1 1 1 1 1 1 1 1 1 1 1 2855.808823 4450.770539 64.11396358 51.97832963 1.233474874 0.091130307
4 3850 4060 1307.456177 37.382355 1003.877258 116.526344 177.159134 17100 43.13036 0.927929 0.972725 0.997238 11.220263 0.859711 2629.134766 39.367645 1580.095093 136.762009 170.381531 17800 43.13036 0.938808 0.95768 0.995453 19.22416 0.872034 1 1 1 1 1 1 1 1 1 1 1 1 1 1270.073822 2589.767121 28.51362672 30.24459875 0.942767565 -0.025595367
5 4100 4070 2303.30249 77.044121 1692.344727 206.056976 186.097076 19500 38.366085 0.955446 0.956985 0.994072 11.177988 0.84346 3783.994629 15.147058 2463.344971 44.752476 179.656982 18900 38.366085 0.928709 0.93679 0.998962 84.553861 0.855169 1 1 1 1 1 1 1 1 1 1 1 1 1 2226.258369 3768.847571 49.98032321 44.01449134 1.135542447 0.055203373
6 4350 4070 1992.534424 57.5 1360.114014 152.385071 184.033096 18900 38.366085 0.951933 0.967339 0.996651 13.075654 0.847213 3628.184326 17.470589 2231.990234 57.204391 167.1754 17900 38.366085 0.922924 0.940636 0.998154 63.424927 0.877863 1 1 1 1 1 1 1 1 1 1 1 1 1 1935.034424 3610.713737 43.442238 42.16772515 1.030224842 0.012932018
7 4590 4070 1886 41.808823 1493.948975 104.929298 184.205978 18400 29.340128 0.949746 0.964317 0.997292 17.974008 0.846898 3440.651611 35.485294 2293.114746 90.86245 178.233932 17800 29.340128 0.927413 0.943481 0.997772 37.866595 0.857756 1 1 1 1 1 1 1 1 1 1 1 1 1 1844.191177 3405.166317 41.40277353 39.76723934 1.041127678 0.017503992
8 4850 4080 1834.805542 91.544121 1430.542725 425.264526 174.443207 18000 35.828548 0.924196 0.964233 0.994102 4.314504 0.841634 3080.550049 49.10294 2003.679321 125.178818 171.49881 18000 35.828548 0.915195 0.952225 0.996368 24.609196 0.870002 1 1 1 1 1 1 1 1 1 1 1 1 1 1743.261421 3031.447109 39.13686321 35.40275907 1.105474947 0.043548905
9 5090 4080 1715.984741 64.720589 1309.68042 158.775894 187.630173 19700 25.933985 0.960562 0.963974 0.99527 10.80759 0.840672 3232.036133 40.661766 2308.418213 123.424469 180.716904 19400 25.933985 0.946106 0.946251 0.996956 26.186348 0.853242 1 1 1 1 1 1 1 1 1 1 1 1 1 1651.264152 3191.374367 37.07149052 37.27046977 0.994661209 -0.002324819
10 5340 4090 1109.104736 53.941177 926.475403 120.991539 181.945694 19100 26.15913 0.949114 0.973846 0.99646 9.166796 0.851008 1892.311279 80.411766 1546.394043 187.928238 182.64415 19600 26.15913 0.962341 0.958183 0.994125 10.069329 0.849738 1 1 1 1 1 1 1 1 1 1 1 1 1 1055.163559 1811.899513 23.68881189 21.16027086 1.119494738 0.049022057
11 5600 4090 1291.802002 57.485294 984.634338 169.988098 188.307541 19700 35.991852 0.962023 0.973969 0.994873 7.599367 0.839441 2380.036133 50.661766 1759.206299 123.843979 178.055252 19400 35.991852 0.948663 0.956306 0.995972 19.218021 0.858081 1 1 1 1 1 1 1 1 1 1 1 1 1 1234.316708 2329.374367 27.7108663 27.20360163 1.018646967 0.008023697
12 5850 4090 760.445007 56.220589 643.528198 148.043945 181.595459 20000 35.991852 0.952737 0.981819 0.994995 5.136617 0.851645 1760.956299 49.661766 1241.780151 120.497429 184.723648 20600 35.991852 0.948547 0.969315 0.996506 14.614057 0.845957 1 1 1 1 1 1 1 1 1 1 1 1 1 704.224418 1711.294533 15.81009846 19.98535547 0.791084176 -0.101777303
13 6100 4100 2474.578613 123.235291 1756.630493 465.962677 181.595459 19700 38.821926 0.945567 0.954071 0.992546 5.31068 0.851645 5118.125488 48 3714.295898 136.473602 176.619293 19900 38.821926 0.931955 0.91803 0.996475 37.502677 0.860692 1 1 1 1 1 1 1 1 1 1 1 1 1 2351.343322 5070.125488 52.78852663 59.21146722 0.891525394 -0.049866282
14 6350 4100 1357.661865 124.470589 1097.722412 257.211823 184.895889 20700 38.821926 0.948709 0.970535 0.991638 5.27838 0.845644 2955.363037 63.426472 2114.3125 139.079208 178.946869 19000 38.821926 0.917563 0.948563 0.995499 21.249496 0.85646 1 1 1 1 1 1 1 1 1 1 1 1 1 1233.191276 2891.936565 27.68559993 33.773485 0.819743652 -0.086321938
15 6600 4110 3519.550781 125.470589 2741.026123 344.34845 185.754669 22700 43.804913 0.95621 0.932083 0.989517 10.220899 0.844082 5273.410645 46.588234 3895.568848 127.062828 187.290573 22900 43.804913 0.958931 0.911629 0.995583 41.502387 0.84129 1 1 1 1 1 1 1 1 1 1 1 1 1 3394.080192 5226.822411 76.19835476 61.04145244 1.248305073 0.096320736
16 6840 4110 1682.364136 109.779411 1573.884888 266.78125 179.479706 20600 36.162926 0.941459 0.963127 0.993416 6.306156 0.855491 3310.30957 87.529411 2389.134033 195.475189 180.364288 19700 36.162926 0.938672 0.941833 0.99324 16.934679 0.853883 1 1 1 1 1 1 1 1 1 1 1 1 1 1572.584725 3222.780159 35.3051083 37.63724235 0.938036532 -0.027780247
17 7100 4110 1300.373047 84.352943 1168.781616 185.534866 181.945694 19300 43.804913 0.936511 0.967697 0.994148 7.00878 0.851008 2690.213623 87.5 2263.66626 178.425995 184.033096 20600 43.804913 0.950898 0.944191 0.994377 15.077476 0.847213 1 1 1 1 1 1 1 1 1 1 1 1 1 1216.020104 2602.713623 27.30010077 30.39579449 0.898153881 -0.046649249
18 7340 4120 1306.567383 113.558823 1027.826294 253.776154 186.779999 21500 43.811935 0.961006 0.971497 0.992783 5.148503 0.842218 2717.236816 67.808823 1879.968018 143.637115 188.813965 20700 43.811935 0.954465 0.95369 0.995918 18.917372 0.83852 1 1 1 1 1 1 1 1 1 1 1 1 1 1193.00856 2649.427993 26.78348311 30.94134832 0.865621072 -0.06267218
19 3100 4300 1330.962524 111.720589 1181.509521 291.632355 184.205978 18700 49.482315 0.943652 0.965942 0.990364 4.563837 0.846898 2288.721924 48.514706 1897.39563 151.425217 181.244553 18700 49.482315 0.949862 0.95369 0.994301 15.114536 0.852283 1 1 1 1 1 1 1 1 1 1 1 1 1 1219.241935 2240.207218 27.37243207 26.16226296 1.046256286 0.01963808
20 3340 4300 2674.620361 67.102943 2128.159668 207.29567 183.339935 16600 42.864742 0.946181 0.949463 0.992798 12.902442 0.848473 4413.315918 62.14706 3694.880859 146.298645 172.239624 17100 42.864742 0.931912 0.912003 0.996262 30.166485 0.868655 1 1 1 1 1 1 1 1 1 1 1 1 1 2607.517418 4351.168858 58.53972977 50.81513126 1.152013747 0.061457662

Total number of rows: 5184

Table truncated, full table size 1740 Kbytes.




Supplementary data files not provided

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