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Sample GSM11911 Query DataSets for GSM11911
Status Public on May 10, 2004
Title RE3_LT2_H2O2_180 min_3D183_1
Sample type RNA
 
Channel 1
Source name LT2 180 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name LT2 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium LT2 Expression after exposure to 2mM H2O2
User - PCheng
Date_of_Scan = Thu Jul 24 10:39:43 2003
Sample_target_source3: LT2 pretreatment genomic DNA
 
Submission date Oct 21, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE806 LT2_hydrogen_peroxide_2mM_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2010 3000 7859.181641 164.5 15845.88867 220.238098 185.067963 24200 16.453707 0.956529 0.501022 0.994705 35.684932 0.572597 361.63504 43.455883 380.651245 124.204025 188.138428 13700 16.453707 0.959881 0.987526 0.995888 2.911621 0.776432 1277.301147 532.029419 338.511719 378.039124 174.989761 8300 16.453707 0.932883 0.990501 0.987076 3.378754 0.814083 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 7694.681641 318.179157 745.271728 0.343826453 0.024799424 0.013928455 13.86429204 24.68518319 1.780486383 1.141897698 1.392436354 0.250538656
2 2260 2990 586.688782 100.058823 597.417297 158.594467 189.990387 19600 15.042643 0.965767 0.982224 0.995461 3.699302 0.82454 328.036499 99.573532 296.932892 175.621475 186.779999 13700 15.042643 0.954226 0.989998 0.995567 1.867861 0.498096 1581.971069 592.661743 491.429321 386.003357 155.331558 6900 15.042643 0.861034 0.987129 0.989494 4.098335 0.836021 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 486.629959 228.462967 989.309326 0.021744402 0.017806792 0.018489297 1.221129712 1.176053515 0.963086479 0.086761799 0.070427084 -0.016334714
3 2510 3000 403.636932 202.544113 328.829651 535.843994 190.492355 15700 16.453707 0.963268 0.99102 0.987915 0.753273 0.200873 235.468475 81.191177 210.415512 169.494003 189.655014 11100 16.453707 0.967651 0.994476 0.994995 1.389244 0.370465 1441.425049 582.455872 383.319489 433.047699 173.528442 4000 16.453707 0.92482 0.987488 0.987053 3.32856 0.812332 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 201.092819 154.277298 858.969177 0.008985561 0.012024635 0.016053357 0.747262704 0.559730957 0.749041742 -0.126526693 -0.252020673 -0.12549398
4 2780 3010 423.190735 136.161758 361.998291 268.803253 190.157852 19400 38.813984 0.966619 0.98983 0.990906 1.574351 0.419827 298.850891 81.441177 231.412674 211.741638 185.583237 11400 38.813984 0.960171 0.993614 0.994186 1.411394 0.376372 1253.597778 511.867645 266.432587 387.176697 176.799423 9200 38.813984 0.923904 0.991989 0.988129 3.237792 0.80908 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 287.028977 217.409714 741.730133 0.012825502 0.016945282 0.013862265 0.756877452 0.925209674 1.222403538 -0.120974433 -0.033759835 0.087214598
5 3030 3010 357.664673 135.75 286.396362 227.37085 186.779999 16700 38.813984 0.951369 0.991516 0.99395 1.573045 0.419479 265.761902 98.838234 242.411942 220.862259 185.754669 10500 38.813984 0.950551 0.992104 0.993362 1.203293 0.320878 1386.024414 552.764709 292.363434 382.404388 172.608841 4100 38.813984 0.920811 0.988556 0.989525 3.624499 0.822206 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 221.914673 166.923668 833.259705 0.009915957 0.013010314 0.01557287 0.762161256 0.636745645 0.835447406 -0.117953132 -0.196034017 -0.078080885
6 3270 2990 535.722473 134.867645 464.599854 221.159424 189.487106 20900 24.939121 0.964349 0.987083 0.995277 2.422336 0.645956 375.176056 78.352943 409.138184 214.700607 185.754669 14200 24.939121 0.959518 0.98391 0.99395 1.747438 0.465984 1342.907837 607.382324 400.354492 820.280151 173.711777 7600 24.939121 0.945338 0.989143 0.977432 1.637133 0.436569 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 400.854828 296.823113 735.525513 0.017911656 0.023134897 0.013746307 0.774226749 1.303015921 1.682990057 -0.111131828 0.114949722 0.22608155
7 3540 3000 396.463776 138.735291 252.480057 199.191254 190.32518 13800 45.362545 0.965648 0.992691 0.994713 1.990367 0.530765 289.244446 41.514706 291.482697 106.255608 182.469788 9000 45.362545 0.957658 0.989616 0.996948 2.722157 0.725909 1281.163696 458.441162 258.063843 320.282501 176.258484 5500 45.362545 0.937938 0.991127 0.990616 4.000105 0.833336 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 257.728485 247.72974 822.722534 0.011516249 0.019308477 0.01537594 0.596434893 0.748978538 1.25575909 -0.224436957 -0.125530627 0.09890633
8 3750 3000 398.828278 126.073532 312.357056 202.827133 189.487106 19800 8.662895 0.972565 0.990044 0.994682 1.966346 0.524359 285.70874 71.338234 256.758636 150.830887 184.205978 10300 8.662895 0.946235 0.992752 0.994774 1.894232 0.505129 1703.212158 621.808838 241.537491 370.954803 120.741859 3300 8.662895 0.788827 0.993462 0.98925 4.591428 0.845379 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 272.754746 214.370506 1081.40332 0.012187677 0.016708401 0.02021045 0.729434083 0.603038393 0.826720888 -0.137013948 -0.219655037 -0.082641089
9 4020 3000 544.018494 135.088242 387.293671 168.49649 185.925949 10800 25.814785 0.956573 0.991081 0.995354 3.228664 0.808747 302.766998 68.941177 253.568695 125.222061 182.469788 10300 25.814785 0.928195 0.992546 0.997025 2.417841 0.644758 1382.195679 577.044128 271.206665 358.906372 172.424332 4600 25.814785 0.933149 0.992119 0.989624 3.851132 0.829093 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 408.930252 233.825821 805.151551 0.018272496 0.018224782 0.015047554 1.002618101 1.214316654 1.211145752 0.001135541 0.084331951 0.08319641
10 4260 3000 609.466675 216.058823 272.624878 282.464111 175.353195 9000 16.453707 0.921664 0.991806 0.991127 2.157678 0.575381 297.210144 112.441177 247.146301 213.817566 187.969162 13800 16.453707 0.964503 0.993851 0.996056 1.390017 0.370671 1486.92749 556.485291 339.005493 325.92691 156.352814 6900 16.453707 0.889254 0.990738 0.990295 4.56215 0.847611 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 393.407852 184.768967 930.442199 0.017578898 0.014401207 0.017389123 1.220654515 1.010913438 0.828173268 0.086592762 0.00471397 -0.081878792
11 4510 2990 624.71698 157.705887 563.637085 241.645798 187.969162 21200 15.042643 0.954918 0.981354 0.993645 2.585259 0.689402 343.299255 127.441177 297.926147 234.238129 185.925949 13700 15.042643 0.955709 0.991432 0.993141 1.465599 0.390826 1418.197144 559.676453 325.37735 411.242432 173.34491 7100 15.042643 0.921309 0.992493 0.987915 3.448567 0.816465 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 467.011093 215.858078 858.520691 0.02086776 0.016824345 0.016044975 1.240331175 1.300579113 1.048574074 0.09353766 0.114136775 0.020599115
12 4750 2990 432.83139 121.102943 349.134583 198.078995 190.992981 17200 5.531943 0.96685 0.989258 0.995155 2.185145 0.582705 256.053833 123.411766 279.092102 258.590271 188.645309 13000 5.531943 0.958585 0.990089 0.991577 0.990191 0.264051 1543.75 645.455872 251.880692 381.183258 155.945114 4000 5.531943 0.839332 0.991165 0.98835 4.049889 0.834708 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 311.728447 132.642067 898.294128 0.013929165 0.010338348 0.016788305 1.347329825 0.829694517 0.615806539 0.129473924 -0.08108178 -0.210555704
13 5010 2980 1607.00415 167.338242 1481.419189 311.559174 191.824478 23800 19.540668 0.97265 0.961517 0.991371 5.157942 0.833046 2565.256592 48.985294 2366.608154 108.383301 187.120529 22600 19.540668 0.967721 0.929871 0.996994 23.668375 0.841599 1484.532227 578.441162 258.704376 375.474915 175.534622 6200 19.540668 0.922143 0.992783 0.987564 3.953745 0.832039 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1439.665908 2516.271298 906.091065 0.064329526 0.196122458 0.016934023 0.328006935 3.798833136 11.58156349 -0.484116975 0.579650218 1.063767192
14 5260 2990 491.789917 188.323532 263.79776 262.625061 188.138428 11900 15.042643 0.968004 0.991913 0.993637 1.872593 0.499358 265.815125 64.955879 218.014038 125.140213 184.033096 11900 15.042643 0.94499 0.993889 0.996078 2.124138 0.566437 1436.5 579.602966 299.246765 358.874359 152.852707 3400 15.042643 0.840779 0.989975 0.989807 4.002794 0.833411 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 303.466385 200.859246 856.897034 0.013559985 0.015655311 0.016014631 0.86615882 0.846724832 0.977563021 -0.062402468 -0.072257703 -0.009855235
15 5510 2990 419.712952 147.220581 244.772064 199.207977 185.925949 10800 15.042643 0.956479 0.992905 0.994675 2.106908 0.561842 240.275864 102.588234 212.388016 204.827866 182.295258 8700 15.042643 0.963102 0.992844 0.993477 1.173062 0.312817 1365.524536 565.941162 251.388718 345.090607 163.712234 6100 15.042643 0.891017 0.991913 0.989899 3.957003 0.83213 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 272.492371 137.68763 799.583374 0.012175953 0.010731608 0.01494349 1.134588016 0.814799845 0.718146 0.054838192 -0.088949062 -0.143787254
16 5760 2990 438.180328 128.352936 355.191284 234.566589 192.487091 18300 15.042643 0.971949 0.988441 0.993942 1.868042 0.498145 445.39856 67.882355 425.688446 179.919174 184.378693 13800 15.042643 0.949023 0.984894 0.993294 2.475548 0.660146 1505.947388 586.661743 267.14212 358.190796 143.175278 3800 15.042643 0.826992 0.992912 0.988602 4.204316 0.838822 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 309.827392 377.516205 919.285645 0.013844218 0.029424254 0.017180617 0.470503633 0.80580448 1.712642418 -0.327437018 -0.093770322 0.233666696
17 6010 2980 684.404358 219.632355 551.719299 358.392548 189.487106 18300 19.540668 0.964478 0.983162 0.991203 1.90965 0.50924 337.25174 97.852943 293.745026 229.640884 185.411636 14300 19.540668 0.95737 0.989082 0.991959 1.468605 0.391628 1758.222168 586.867676 818.267822 349.276611 155.740875 5400 19.540668 0.852229 0.988754 0.98893 5.033896 0.857831 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 464.772003 239.398797 1171.354492 0.020767709 0.018659149 0.021891556 1.1130041 0.948662987 0.852344558 0.046496764 -0.022888043 -0.069384808
18 6270 2980 438.145081 85.485291 409.256958 154.430435 189.487106 19300 27.883982 0.965757 0.985725 0.995163 2.837168 0.756578 255.057846 104.794121 219.785736 175.611893 191.49231 12100 27.883982 0.965577 0.9925 0.995735 1.452395 0.387305 1305.647095 584.691162 266.927979 412.799164 165.260376 3400 27.883982 0.880583 0.98851 0.987823 3.162911 0.806311 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 352.65979 150.263725 720.955933 0.015758126 0.01171181 0.013474014 1.345490274 1.169519774 0.869214588 0.128880563 0.068007569 -0.060872993
19 1980 3240 372.333344 123.088234 327.578156 200.551086 188.982483 12900 15.467546 0.969462 0.989594 0.995232 1.856551 0.49508 298.821777 96.264709 265.919586 212.18779 184.033096 10100 15.467546 0.954138 0.992287 0.992935 1.408289 0.375544 1387.086914 548.014709 273.960999 364.113007 143.840698 2300 15.467546 0.82663 0.992088 0.989494 3.809496 0.811426 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 249.24511 202.557068 839.072205 0.011137181 0.015787642 0.015681501 0.705436641 0.710211428 1.006768557 -0.151541987 -0.148612343 0.002929643
20 2230 3240 410.601257 126.882355 534.282349 228.588104 192.982544 15800 15.467546 0.975695 0.990288 0.994362 1.796249 0.479 279.311096 93.794121 264.885345 205.234955 189.655014 9000 15.467546 0.971818 0.991508 0.994995 1.360933 0.362916 1482.181763 555.647034 202.376266 319.315765 152.226685 2200 15.467546 0.868626 0.994263 0.990448 4.641743 0.80803 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 283.718902 185.516975 926.534729 0.012677596 0.014459508 0.017316096 0.876765364 0.732127825 0.835032786 -0.057116615 -0.135413087 -0.078296472

Total number of rows: 5184

Table truncated, full table size 2718 Kbytes.




Supplementary data files not provided

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