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Sample GSM11914 Query DataSets for GSM11914
Status Public on May 10, 2004
Title RE3_LT2_H2O2_120min_3D145_1
Sample type RNA
 
Channel 1
Source name LT2 120 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name LT2 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium LT2 Expression after exposure to 2mM H2O2 for 120min
User - PCheng
Date_of_Scan = Wed Jul 23 12:28:32 2003
Sample_target_source3: LT2 genomic DNA
 
Submission date Oct 21, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE806 LT2_hydrogen_peroxide_2mM_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 1800 3090 2093.329102 27.367647 4071.229248 98.973976 186.268051 15500 31.155184 0.960213 0.883034 0.996193 21.150298 0.843149 225.059708 67.397057 218.208542 130.586639 186.268051 6700 31.155184 0.959956 0.993095 0.996628 1.723451 0.459587 1270.0625 488.25 444.830505 421.805786 178.41243 6400 31.155184 0.929817 0.986443 0.989822 3.011013 0.80044 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2065.961455 157.662651 781.8125 0.172884065 0.012735786 0.023171934 13.57466781 7.460925087 0.549621191 1.132729211 0.872792679 -0.259936531
2 2050 3100 287.090912 95.441177 276.953125 184.548538 182.992371 8800 40.782818 0.954564 0.992035 0.994888 1.555639 0.414837 269.644745 24.264706 256.224731 87.035355 183.166229 7600 40.782818 0.960703 0.991966 0.998322 3.098106 0.803849 1270.252686 370.926483 501.445343 292.090332 167.365692 9500 40.782818 0.908362 0.985519 0.991585 4.348835 0.842491 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 191.649735 245.380039 899.326203 0.016037659 0.019821484 0.026654892 0.809104865 0.601677887 0.743633999 -0.091995187 -0.22063595 -0.128640762
3 2300 3100 269.028839 43.85294 216.016693 120.273354 188.645309 10400 40.782818 0.960387 0.994041 0.996979 2.236812 0.596483 222.784317 85.426468 221.415298 306.353394 173.161194 5100 40.782818 0.949947 0.99437 0.993416 0.727213 0.193924 1220.73584 519.867676 249.291 389.942505 169.068726 5300 40.782818 0.898353 0.992332 0.989319 3.130553 0.805089 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 225.175899 137.357849 700.868164 0.0188432 0.01109559 0.020772846 1.698260251 0.907107268 0.534139139 0.230004245 -0.042341353 -0.272345598
4 2550 3100 296.403839 81.838234 247.882156 152.431198 187.630173 10400 40.782818 0.957204 0.993027 0.996323 1.944509 0.518536 170.526321 42.705883 169.4879 126.39975 179.124664 5700 40.782818 0.946135 0.995193 0.995964 1.349103 0.359761 1132.25647 413.308838 328.981476 328.644531 178.41243 7800 40.782818 0.944072 0.990013 0.990166 3.445231 0.816353 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 214.565605 127.820438 718.947632 0.017955308 0.01032517 0.021308699 1.738984155 0.84262807 0.484551897 0.240295625 -0.074364077 -0.314659702
5 2800 3090 239.675323 45 195.525772 97.088051 187.290573 7700 31.155184 0.956834 0.994644 0.997566 2.468639 0.658304 201.214279 58.058823 171.570999 146.854263 179.124664 5600 31.155184 0.927339 0.995972 0.996727 1.370163 0.365377 941.46936 399.073517 244.637878 331.293182 177.697342 9800 31.155184 0.934106 0.993645 0.991272 2.841801 0.757814 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 194.675323 143.155456 542.395843 0.016290847 0.011563913 0.016075927 1.408765865 1.013369027 0.719331049 0.14883882 0.005767626 -0.143071194
6 3040 3080 261.393616 54.779411 231.117081 145.739471 184.723648 9400 19.633133 0.962661 0.993195 0.995232 1.793568 0.478285 207.346939 48.60294 179.936737 188.943741 171.684311 4900 19.633133 0.918779 0.994209 0.995018 1.0974 0.29264 1112.870605 380.808838 341.188416 310.850647 178.41243 8500 19.633133 0.929245 0.990486 0.991966 3.580081 0.820791 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 206.614205 158.743999 732.061767 0.017289918 0.012823136 0.021697385 1.348337709 0.796866419 0.590999134 0.129798681 -0.098614475 -0.228413155
7 3290 3080 223.465118 49.279411 231.950378 147.255981 185.067963 8600 19.633133 0.958036 0.992142 0.996567 1.517528 0.404674 206.111115 56.64706 193.875092 130.854004 169.632599 6300 19.633133 0.914671 0.994034 0.996071 1.575123 0.420033 993.220764 346.705872 313.76004 282.365387 180.89296 7700 19.633133 0.951716 0.990723 0.992142 3.517502 0.818759 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 174.185707 149.464055 646.514892 0.014576232 0.012073514 0.019161884 1.207289923 0.760688862 0.630079691 0.081811576 -0.118792943 -0.200604518
8 3540 3070 209.344452 48.926472 189.693726 129.831619 182.64415 9000 9.636758 0.942353 0.994392 0.99691 1.61243 0.429981 258.934418 5.352941 420.734467 26.661373 174.989761 6100 9.636758 0.953636 0.992744 0.999458 9.711969 0.863655 1079.222168 372.176483 417.740265 296.727936 173.528442 8100 9.636758 0.891463 0.983589 0.992348 3.637076 0.822603 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 160.41798 253.581477 707.045685 0.013424119 0.020483985 0.02095594 0.655347032 0.640587768 0.977478705 -0.183528663 -0.193421358 -0.009892695
9 3790 3080 272.684784 55.367645 363.577698 115.896492 180.54068 9200 19.633133 0.945613 0.986778 0.996948 2.35283 0.627421 213.383331 37.088234 218.08139 140.777451 178.768906 6000 19.633133 0.930639 0.994934 0.997704 1.515749 0.4042 1054.289185 381.088226 489.395782 306.440643 172.977264 8300 19.633133 0.939298 0.980804 0.990341 3.440435 0.816191 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 217.317139 176.295097 673.200959 0.018185562 0.014240891 0.019952825 1.276996084 0.911427919 0.713728045 0.106189565 -0.040277672 -0.146467238
10 4050 3080 291.704346 72.676468 281.449707 167.513458 183.860046 11500 21.864416 0.960123 0.99276 0.995117 1.741379 0.464368 227.920456 47.838234 199.571793 159.94426 174.80777 8800 21.864416 0.934278 0.993866 0.995705 1.424999 0.38 1267.525024 418.485291 453.985565 353.159882 173.34491 8000 21.864416 0.907284 0.987053 0.990356 3.589097 0.82108 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 219.027878 180.082222 849.039733 0.01832872 0.01454681 0.025164464 1.259982101 0.728357264 0.578069532 0.100364376 -0.137655544 -0.23801992
11 4300 3070 989.364502 136.985291 5029.844727 516.412537 181.945694 10700 13.618365 0.946051 0.973274 0.991737 1.915841 0.510891 939.270569 337.044128 3996.530273 2320.164063 182.64415 8500 13.618365 0.944928 0.911781 0.996498 0.404829 0.107955 2359.583252 481.323517 4307.509277 372.17572 158.576431 7200 13.618365 0.876479 0.822014 0.986832 6.339971 0.880095 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 852.379211 602.226441 1878.259735 0.071328912 0.048647077 0.055669244 1.466252786 1.281298375 0.873859124 0.16620885 0.107650275 -0.058558575
12 4540 3060 265.50943 73.411766 252.789368 199.870499 185.583237 10600 0.52377 0.957611 0.992584 0.996078 1.328407 0.354242 222.600006 16.955883 212.646545 80.682434 172.424332 6500 0.52377 0.890056 0.993172 0.998672 2.758965 0.735724 1224.56604 416.691162 258.318054 307.83963 176.619293 5300 0.52377 0.918409 0.992996 0.992279 3.977935 0.832718 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 192.097664 205.644123 807.874878 0.016075143 0.016611668 0.02394439 0.967701918 0.671353187 0.693760315 -0.014258398 -0.173048945 -0.158790547
13 4800 3060 671.812805 45.426472 621.751648 110.614746 184.033096 18700 9.636758 0.944733 0.981224 0.996704 6.073447 0.847213 1646.078125 36.279411 1295.208374 104.890968 185.583237 19200 9.636758 0.957899 0.961716 0.997185 15.69323 0.844394 1186.177124 443.764709 321.344788 342.653839 174.80777 9600 9.636758 0.931706 0.992577 0.989983 3.461736 0.816908 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 626.386333 1609.798714 742.412415 0.052417345 0.130037468 0.022004165 0.403094171 2.382155581 5.90967509 -0.394593482 0.376970122 0.771563604
14 5050 3070 268.788879 70.132355 285.307739 183.384827 185.754669 9000 13.618365 0.966503 0.990768 0.993546 1.465709 0.390856 548.133362 62.205883 2109.178467 138.289825 171.313095 6000 13.618365 0.929638 0.984695 0.996483 3.963656 0.832318 1947.54541 528.161743 4201.563965 369.976471 162.345505 4400 13.618365 0.857373 0.790825 0.989914 5.263971 0.86055 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 198.656524 485.927479 1419.383667 0.016624002 0.039252596 0.042068738 0.423513437 0.395162845 0.933058577 -0.373132806 -0.403223897 -0.030091091
15 5290 3050 272.757019 73.705879 225.449432 167.161026 188.476501 10700 10.376972 0.958587 0.99395 0.995346 1.631702 0.435121 196.014709 44.264706 185.508545 113.175018 183.860046 6800 10.376972 0.957049 0.994942 0.996216 1.731961 0.461856 1210.970581 431.75 350.070923 343.395447 170.007477 10200 10.376972 0.932377 0.990326 0.991364 3.526461 0.819052 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 199.05114 151.750003 779.220581 0.016657024 0.01225817 0.023095113 1.358850823 0.721235889 0.530768997 0.133171782 -0.141922671 -0.275094452
16 5540 3040 658.91272 116.411766 3148.248291 246.26828 184.551254 12600 20.373728 0.958282 0.975197 0.992523 2.675589 0.71349 1617.170044 41.720589 6997.026367 105.480545 176.799423 10000 20.373728 0.919869 0.858063 0.996399 15.331453 0.860365 4161.677246 481.897064 11680.90918 345.584167 147.98555 3100 20.373728 0.854688 0.525604 0.98893 12.042442 0.600691 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 542.500954 1575.449455 3679.780182 0.045397638 0.127262779 0.109064033 0.356723609 0.416247564 1.166862955 -0.447668147 -0.380648295 0.067019852
17 5800 3050 273.163635 66.838234 256.803772 151.469376 183.860046 11000 14.151832 0.955351 0.991516 0.995583 1.803425 0.480913 239.185562 39.235294 237.732437 108.419464 184.895889 9700 14.151832 0.963311 0.992851 0.996437 2.206113 0.588297 1159.040527 444.970581 301.222137 335.408325 167.365692 7400 14.151832 0.89658 0.98999 0.99041 3.45561 0.816702 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 206.325401 199.950268 714.069946 0.01726575 0.016151725 0.02116413 1.068972488 0.815802474 0.763165079 0.028966528 -0.088414982 -0.11738151
18 6050 3030 216.72641 61.588234 202.932999 126.938606 188.138428 10600 31.860458 0.965557 0.994789 0.996529 1.707333 0.455289 251.540985 51.191177 188.924194 108.44178 175.896927 6100 31.860458 0.91159 0.995285 0.997009 2.319595 0.618559 925.508789 339.882355 247.363541 256.669617 176.799423 5700 31.860458 0.950805 0.991989 0.993462 3.605837 0.821615 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 155.138176 200.349808 585.626434 0.012982294 0.016184 0.017357227 0.80216844 0.747947447 0.932406973 -0.095734429 -0.126128916 -0.030394487
19 1780 3320 193.639999 92.323532 151.657654 189.717346 178.233932 7500 14.151832 0.946276 0.995926 0.994881 1.020676 0.27218 212 53.573528 187.767029 154.509369 181.595459 6200 14.151832 0.948001 0.995003 0.996643 1.372085 0.365889 1184.5 487.382355 217.601425 362.157349 144.503052 1800 14.151832 0.897733 0.995148 0.989998 3.270678 0.794449 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 101.316467 158.426472 697.117645 0.008478378 0.012797487 0.020661686 0.662503393 0.410343007 0.619382498 -0.178811893 -0.386852964 -0.20804107
20 2040 3330 266.63855 56.970589 262.019684 155.742615 180.716904 8300 19.633133 0.935802 0.991905 0.994766 1.712046 0.456546 209.689651 37.867645 203.131561 81.320976 182.469788 5800 19.633133 0.959203 0.994576 0.99791 2.578543 0.687612 1057.852295 390.102936 317.909973 347.361053 165.260376 8800 19.633133 0.91324 0.991142 0.989998 3.045397 0.8018 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 209.667961 171.822006 667.749359 0.017545463 0.013879561 0.019791247 1.264122343 0.886526387 0.701297934 0.101789107 -0.052308333 -0.154097441

Total number of rows: 5184

Table truncated, full table size 2699 Kbytes.




Supplementary data files not provided

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