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Sample GSM11917 Query DataSets for GSM11917
Status Public on May 10, 2004
Title RE3_LT2_H2O2_5 min_3D144_1
Sample type RNA
 
Channel 1
Source name LT2 5 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name LT2 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium LT2 Expression after exposure to 2mM H2O2 for 5min
User - PCheng
Date_of_Scan = Wed Jul 23 11:33:39 2003
Sample_target_source3: LT2 genomic DNA
 
Submission date Oct 21, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE806 LT2_hydrogen_peroxide_2mM_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2230 3020 1711.697266 92.161766 3507.755615 196.132278 189.655014 18500 29.069183 0.963612 0.898048 0.995529 8.727259 0.836991 207.60228 29.661764 185.805206 71.047729 182.295258 8800 29.069183 0.95249 0.99588 0.997711 2.922011 0.779203 1251.140991 488.897064 356.556915 401.490997 183.166229 7800 29.069183 0.947562 0.987091 0.986916 3.116237 0.804544 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1619.5355 177.940516 762.243927 0.14039023 0.01415062 0.02324356 9.921136046 6.039962407 0.608797458 0.996561405 0.781034236 -0.21552717
2 2480 3020 286.118652 63.838234 278.5159 131.880051 189.150833 11800 29.069183 0.964612 0.991318 0.99649 2.169537 0.578543 284.107513 82.411766 283.69754 197.528549 180.54068 9300 29.069183 0.948308 0.992592 0.992065 1.438311 0.38355 1132.075439 365.132355 864.866089 323.416473 181.595459 10600 29.069183 0.953212 0.983841 0.991371 3.500364 0.818194 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 222.280418 201.695747 766.943084 0.019268487 0.016039742 0.023386854 1.201296586 0.823902471 0.685844346 0.079650243 -0.084124194 -0.163774437
3 2730 3020 1031.379272 84.235291 5527.486328 195.122696 190.992981 11600 29.069183 0.964151 0.978912 0.993698 5.285799 0.834558 396.5065 32.691177 782.475891 107.420952 183.513474 7700 29.069183 0.964801 0.971375 0.996208 3.691147 0.824288 2379.866699 482.558838 7607.080566 470.356567 172.424332 7500 29.069183 0.933581 0.892281 0.985825 5.059708 0.858351 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 947.143981 363.815323 1897.307861 0.082103641 0.028932211 0.057855744 2.83779354 1.419109587 0.500074994 0.452980796 0.152015934 -0.300964862
4 2980 3020 300 91.867645 302.57019 200.544403 186.438858 8700 29.069183 0.957078 0.993332 0.994186 1.495928 0.398914 216.521133 61.161766 199.416718 158.166611 179.834061 7100 29.069183 0.945663 0.995483 0.995148 1.368943 0.365052 1178.269897 441.808838 251.958282 310.597931 175.896927 6300 29.069183 0.926791 0.993103 0.991135 3.793554 0.827394 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 208.132355 155.359367 736.461059 0.018042055 0.012354867 0.022457348 1.460319666 0.803392081 0.550148094 0.164447934 -0.095072454 -0.259520387
5 3230 3020 279.931366 113.25 322.145325 217.658386 188.813965 10200 29.069183 0.962406 0.992432 0.995506 1.286104 0.342961 276.25 27.955883 252.39209 83.824524 185.925949 7200 29.069183 0.955227 0.992874 0.997002 3.295575 0.811163 954.032959 347.808838 244.830795 290.819427 181.595459 9100 29.069183 0.94266 0.991318 0.99205 3.280499 0.810624 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 166.681366 248.294117 606.224121 0.014448856 0.019745451 0.018485955 0.731756182 0.781612641 1.068132612 -0.1356336 -0.107008425 0.028625175
6 3470 3020 289.377563 93.661766 251.076965 228.938477 186.950348 9800 21.729603 0.966601 0.992783 0.994057 1.263997 0.337066 191.257568 29.308823 155.495468 65.263931 185.754669 6600 21.729603 0.949943 0.995628 0.998299 2.930525 0.781473 1146 422.367645 668.63031 319.257904 177.876389 8900 21.729603 0.933926 0.985924 0.991539 3.589574 0.821096 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 195.715797 161.948745 723.632355 0.01696572 0.012878884 0.022066155 1.317328453 0.76885712 0.583648761 0.119694072 -0.11415436 -0.233848432
7 3720 3010 226.666672 74.176468 226.596222 184.901901 187.630173 10800 15.293924 0.952809 0.993156 0.995094 1.225875 0.3269 221.971436 28.441177 228.329849 98.624626 181.244553 7000 15.293924 0.950902 0.995743 0.996712 2.250669 0.600179 1203.280029 493.132355 249.905457 352.325836 170.194611 5000 15.293924 0.905126 0.990639 0.990608 3.415248 0.815336 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 152.490204 193.530259 710.147674 0.013218688 0.015390386 0.021654958 0.858892571 0.610423174 0.710709575 -0.066061154 -0.214368987 -0.148307833
8 3970 3010 239.527466 80.544121 253.86853 209.033203 186.950348 9100 15.293924 0.969339 0.993301 0.994171 1.145882 0.305569 223.550003 44.367645 185.024658 127.099548 174.260635 8000 15.293924 0.907651 0.99437 0.996437 1.758858 0.469029 1144.282104 430.264709 276.799072 299.417114 164.87471 3900 15.293924 0.908629 0.99054 0.991158 3.821699 0.828229 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 158.983345 179.182358 714.017395 0.013781549 0.014249377 0.02177296 0.96716854 0.63296628 0.654452925 -0.014497839 -0.198619426 -0.184121587
9 4230 3010 266.831696 73.044121 232.833374 155.777634 189.990387 10100 24.632214 0.963204 0.993019 0.995796 1.712901 0.456774 221.011902 98.161766 201.831223 155.008682 178.055252 8400 24.632214 0.921274 0.995361 0.996407 1.425803 0.380214 1154.025635 420.014709 323.506897 293.822479 162.737167 3900 24.632214 0.874852 0.987999 0.992317 3.927629 0.831298 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 193.787575 122.850136 734.010926 0.016798571 0.009769589 0.022382634 1.719475789 0.750518047 0.43648073 0.235396065 -0.12463886 -0.360034925
10 4490 3020 1118.511841 48.514706 6267.536133 127.874298 189.990387 12700 37.654472 0.970347 0.979111 0.995773 8.746964 0.836381 541.647034 47.39706 1600.728882 103.660774 181.42009 10200 37.654472 0.958354 0.980148 0.997559 5.225188 0.851963 5011.456055 479.720581 13174.05078 331.245728 165.260376 6800 37.654472 0.871256 0.507301 0.989006 15.129119 0.579773 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1069.997135 494.249974 4531.735474 0.092753227 0.039304954 0.138188922 2.359835544 0.671205953 0.284429123 0.372881738 -0.1731442 -0.546025938
11 4750 3020 270.817322 35.279411 252.265915 90.209679 186.609512 10400 46.804924 0.959074 0.993073 0.99765 3.002087 0.800083 270.833344 67.661766 306.263 157.738556 178.41243 7800 46.804924 0.94129 0.992172 0.995316 1.716976 0.45786 971.180847 389.485291 321.778595 300.398712 186.609512 9400 46.804924 0.969327 0.991074 0.991394 3.232973 0.808904 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 235.537911 203.171578 581.695556 0.02041772 0.016157107 0.017737991 1.263699006 1.151072847 0.910875803 0.101643644 0.061102809 -0.040540834
12 4980 3030 269.590485 81.602943 260.277527 184.532425 185.583237 10500 35.823021 0.94975 0.993034 0.99453 1.460938 0.389584 255.25 20.602942 222.260208 69.754181 178.41243 9600 35.823021 0.956962 0.992691 0.998016 3.659279 0.823299 1023.303772 364.764709 270.02417 288.733002 172.608841 7900 35.823021 0.934832 0.992981 0.991081 3.544118 0.819629 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 187.987542 234.647058 658.539063 0.016295792 0.018660177 0.020081226 0.873292508 0.811493909 0.929234937 -0.058840265 -0.090714736 -0.03187447
13 5220 3020 891.780945 68.794121 860.401611 131.195938 185.239883 21000 21.729603 0.967805 0.974449 0.996651 6.797321 0.845018 2161.004883 47.073528 1676.918335 150.441376 185.239883 20400 21.729603 0.94523 0.953407 0.995064 14.364432 0.845018 1310.305054 484.132355 808.46228 402.127991 154.303543 5900 21.729603 0.912591 0.970039 0.988937 3.258428 0.809829 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 822.986824 2113.931355 826.172699 0.071341017 0.168109214 0.025192979 0.424373035 2.831781753 6.672859777 -0.37225222 0.452059779 0.824311999
14 5470 3040 230.173462 78.911766 271.318848 162.447296 183.513474 9800 39.353764 0.949571 0.989426 0.996216 1.416912 0.377843 248.455887 65.794121 256.435455 194.045044 176.619293 6800 39.353764 0.946343 0.992325 0.993332 1.280403 0.341441 1047.395874 381.088226 235.923965 249.896439 174.62558 4800 39.353764 0.919927 0.992325 0.991791 4.19132 0.838484 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 151.261696 182.661766 666.307648 0.013112194 0.014526075 0.020318118 0.902666015 0.645344932 0.714932124 -0.044472908 -0.190208096 -0.145735188
15 5720 3000 253.659348 82.014709 234.990646 181.129822 180.187729 9100 13.986874 0.946439 0.993538 0.993797 1.400428 0.373448 235.987503 36.367645 192.975266 94.692261 188.138428 8000 13.986874 0.952429 0.994621 0.99794 2.492152 0.664574 926.87915 365.5 235.664825 290.787079 185.239883 9100 13.986874 0.956552 0.99292 0.991989 3.187484 0.807228 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 171.644639 199.619858 561.37915 0.0148791 0.015874658 0.01711847 0.937286323 0.869183956 0.927340915 -0.02812772 -0.060888299 -0.032760579
16 5970 3000 263.348206 58 238.045074 127.71096 182.992371 11200 13.986874 0.941621 0.993462 0.995888 2.062064 0.549884 278.975616 48.117645 226.28923 134.689972 174.62558 8200 13.986874 0.952469 0.993126 0.996239 2.071243 0.552331 994 396.852936 179.067032 316.441284 178.768906 5700 13.986874 0.90274 0.994812 0.989792 3.141183 0.805492 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 205.348206 230.857971 597.147064 0.01780071 0.018358852 0.018209163 0.969598237 0.977568836 1.008220517 -0.013408183 -0.009852652 0.003555531
17 6230 3010 277.021057 82.588234 232.939911 188.372391 182.12056 9500 24.632214 0.934431 0.992859 0.994415 1.470603 0.392161 338.787872 64.132355 315.245667 133.709412 182.992371 9900 24.632214 0.931264 0.990578 0.996094 2.533762 0.67567 1155.50708 400.941162 316.503693 321.314636 168.880341 7100 24.632214 0.899545 0.99057 0.990929 3.596186 0.821307 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 194.432823 274.655517 754.565918 0.016854505 0.021841827 0.02300943 0.771661856 0.732504223 0.949255451 -0.112572967 -0.135189867 -0.0226169
18 6480 2990 218.307693 53.455883 172.961411 96.023232 186.097076 10400 27.022268 0.965132 0.995377 0.997398 2.273488 0.606264 264.172424 37.073528 252.6008 105.472824 182.295258 5800 27.022268 0.941176 0.993324 0.99781 2.504649 0.667906 1027.020386 462.279419 226.340775 386.554565 173.161194 4900 27.022268 0.940375 0.992622 0.989265 2.656857 0.708495 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 164.85181 227.098896 564.740967 0.01429026 0.018059913 0.017220984 0.79126959 0.829816685 1.048715502 -0.101675525 -0.081017837 0.020657688
19 2200 3260 253.08989 62.558823 226.598389 165.873215 185.067963 8900 9.392578 0.951907 0.991341 0.995224 1.525803 0.406881 269.228577 36.720589 254.380707 108.183075 178.233932 7000 9.392578 0.949848 0.991241 0.997757 2.488639 0.663637 1163.388916 451.911774 244.690277 333.326538 177.159134 3600 9.392578 0.932941 0.990662 0.989777 3.490238 0.817859 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 190.531067 232.507988 711.477142 0.016516279 0.018490068 0.021695498 0.893251389 0.761276781 0.852253678 -0.0490263 -0.118457416 -0.069431116
20 2450 3260 292.356445 79.808823 314.537933 166.738174 185.239883 10100 9.392578 0.955758 0.99276 0.994644 1.753386 0.46757 223.714279 55.514706 177.131989 129.38736 179.834061 7000 9.392578 0.950978 0.995438 0.997002 1.729027 0.461074 1219.137207 479.617645 294.91037 355.896027 172.793152 5100 9.392578 0.948851 0.991974 0.989784 3.425543 0.815687 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 212.547622 168.199573 739.519562 0.018424795 0.013375977 0.022550613 1.377454113 0.817041884 0.593153613 0.13907714 -0.08775568 -0.22683282

Total number of rows: 5184

Table truncated, full table size 2697 Kbytes.




Supplementary data files not provided

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