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Sample GSM11918 Query DataSets for GSM11918
Status Public on May 10, 2004
Title RE3_LT2_H2O2_5 min_3D144_2
Sample type RNA
 
Channel 1
Source name LT2 5 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name LT2 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium LT2 Expression after exposure to 2mM H2O2 for 5min
User - PCheng
Date_of_Scan = Wed Jul 23 11:33:39 2003
Sample_target_source3: LT2 genomic DNA
 
Submission date Oct 21, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE806 LT2_hydrogen_peroxide_2mM_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2120 21770 4333.243652 51.323528 9151.640625 130.824524 186.097076 20100 25.969734 0.960273 0.745071 0.996414 33.122564 0.830048 565.047607 25.044117 798.843628 68.678665 181.42009 12600 25.969734 0.953518 0.981056 0.998085 8.227411 0.851963 1844.75 393.235291 5027.380859 303.399536 176.258484 8000 25.969734 0.898044 0.966492 0.990952 6.080266 0.861348 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4281.920124 540.00349 1451.514709 0.367189038 0.043073339 0.043323395 8.524740518 8.475536975 0.994228148 0.930681169 0.928167223 -0.002513946
2 2360 21770 233.317307 70.852943 232.360001 167.501328 182.992371 10400 16.169825 0.944713 0.992851 0.995117 1.392928 0.371448 222.675003 44.75 197.516983 125.78759 176.97937 8000 16.169825 0.952236 0.994247 0.995949 1.770246 0.472066 1160.440918 384.705872 355.652832 260.695282 177.33873 9300 16.169825 0.948371 0.990257 0.991753 4.451331 0.844993 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 162.464364 177.925003 775.735046 0.013931865 0.014192175 0.023153383 0.981658218 0.601720496 0.612963336 -0.008039693 -0.220605195 -0.212565502
3 2610 21780 217.553391 56.294117 175.691559 148.193604 184.895889 10300 21.046204 0.959208 0.995369 0.996544 1.468035 0.391476 232.691177 58.779411 197.495453 155.431976 179.834061 6800 21.046204 0.931591 0.994118 0.99572 1.497061 0.399216 958.740723 366.75 319.956268 317.420013 178.055252 8100 21.046204 0.928606 0.988411 0.991486 3.020417 0.800813 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 161.259274 173.911766 591.990723 0.013828525 0.013872059 0.017669162 0.996861696 0.782636146 0.785100028 -0.001365091 -0.106440098 -0.105075007
4 2880 21780 295.490753 53.279411 236.366791 148.945938 182.818344 10800 38.325848 0.954227 0.993027 0.996254 1.983879 0.529034 285 57.970589 446.735901 143.734619 185.754669 6500 38.325848 0.95363 0.992867 0.995964 1.982821 0.528752 1145.839111 390.911774 322.36795 387.425018 159.975372 8700 38.325848 0.926996 0.989197 0.989784 2.957576 0.788687 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 242.211342 227.029411 754.927337 0.020770436 0.018108984 0.022532335 1.146968596 0.921805779 0.803688769 0.059551527 -0.035360574 -0.094912101
5 3130 21780 235.442108 54.985294 222.204559 132.926132 181.77066 9500 38.325848 0.946603 0.993996 0.995087 1.771225 0.472327 204.098038 15.191176 165.951828 66.476181 178.41243 5100 38.325848 0.932335 0.995186 0.998268 3.070243 0.802771 1039.869507 344.191162 476.550079 274.924255 178.055252 6900 38.325848 0.932822 0.980995 0.992752 3.782385 0.827061 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 180.456814 188.906862 695.678345 0.015474778 0.015068142 0.020763929 1.026986478 0.745272168 0.725688395 0.011564725 -0.127685097 -0.139249822
6 3370 21770 307.557892 91.514709 306.347137 175.632126 181.42009 9500 25.969734 0.946608 0.988869 0.995415 1.751148 0.466973 242.587296 39.39706 182.527908 122.015923 182.64415 6300 25.969734 0.942665 0.99485 0.995415 1.988161 0.530176 995.323059 384.852936 201.6362 339.81424 172.054718 6500 25.969734 0.920555 0.994949 0.989761 2.929021 0.781072 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 216.043183 203.190236 610.470123 0.018526429 0.016207454 0.018220717 1.143080737 1.016778269 0.889506958 0.058076906 0.007226256 -0.05085065
7 3620 21770 233.887634 56.632355 223.782288 109.736847 187.290573 8900 25.969734 0.962489 0.992798 0.996864 2.13135 0.56836 251.242432 35.617645 248.038895 107.823936 176.97937 6600 25.969734 0.933185 0.992226 0.996773 2.330117 0.621365 865.084229 360.720581 300.004272 341.987152 180.364288 9500 25.969734 0.949708 0.991211 0.989464 2.529581 0.674555 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 177.255279 215.624787 504.363648 0.015200236 0.017199295 0.015053754 0.883770841 1.009730566 1.142525324 -0.053660332 0.004205503 0.057865835
8 3870 21770 283.296295 53.588234 259.054016 157.376266 184.205978 10800 25.969734 0.951299 0.992371 0.995865 1.800121 0.480032 738.272705 35.676472 2476.379883 96.615166 184.205978 6600 25.969734 0.95493 0.924248 0.996735 7.641375 0.846898 1853.831787 347.676483 6537.896484 257.007965 175.17157 10700 25.969734 0.92528 0.94001 0.992844 7.21313 0.863324 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 229.708061 702.596233 1506.155304 0.019698238 0.056042537 0.044954254 0.351487263 0.438184068 1.24665703 -0.454090408 -0.358343417 0.09574699
9 4120 21770 259.086945 70.705879 226.505203 139.545746 187.630173 9200 25.969734 0.965229 0.993225 0.996094 1.856645 0.495105 236.171875 35.235294 245.097687 97.596809 178.41243 6400 25.969734 0.940857 0.992104 0.996979 2.419873 0.645299 1084.349976 389.735291 207.362991 275.534576 165.837204 4000 25.969734 0.886373 0.993538 0.992569 3.935441 0.83152 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 188.381066 200.936581 694.614685 0.016154309 0.016027692 0.020732182 1.007899931 0.779190039 0.773082739 0.003417415 -0.108356608 -0.111774023
10 4370 21770 281.380951 66.485291 275.204773 213.81282 185.239883 10500 25.969734 0.966293 0.992523 0.996094 1.316015 0.350937 289.134827 26.17647 255.048264 75.977989 174.80777 8900 25.969734 0.949084 0.991928 0.997879 3.805508 0.82775 1010.854675 362.235291 330.878601 330.349518 181.068848 11700 25.969734 0.933755 0.989815 0.991386 3.059955 0.80237 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 214.89566 262.958357 648.619384 0.018428025 0.020974854 0.019359359 0.878577022 0.951892322 1.083447777 -0.056220159 -0.021412176 0.034807983
11 4620 21780 267.896912 82.308823 244.847717 221.114029 183.339935 9700 29.25588 0.950395 0.992699 0.99482 1.211578 0.323087 251.710526 41.676472 211.324448 135.573456 167.935287 7600 29.25588 0.94895 0.994293 0.99704 1.856636 0.495103 1113.293457 404.397064 305.92276 294.305969 184.551254 9200 29.25588 0.937676 0.990929 0.991623 3.782776 0.827073 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 185.588089 210.034054 708.896393 0.015914802 0.016753351 0.021158448 0.9499474 0.752172473 0.791804339 -0.022300442 -0.123682564 -0.101382123
12 4870 21770 306.466675 71.852943 237.24173 153.003296 181.068848 10500 25.969734 0.936572 0.993629 0.995796 2.003007 0.534135 254.65715 60.64706 210.664566 181.010742 178.055252 7000 25.969734 0.945399 0.993774 0.993645 1.406862 0.375163 1128.53064 336.294128 286.059509 260.749084 164.488129 4900 25.969734 0.915735 0.992165 0.993141 4.328033 0.841973 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 234.613732 194.01009 792.236512 0.020118916 0.015475201 0.023645903 1.300074633 0.850841523 0.654455907 0.113968284 -0.070151324 -0.184119608
13 5120 21770 880.148499 105.647057 852.359314 191.448975 187.460449 20200 25.969734 0.960636 0.975029 0.993576 4.597301 0.840981 2035.32312 51.720589 1803.814819 131.27536 179.834061 19500 25.969734 0.942643 0.950722 0.99662 15.504228 0.854847 1057.154907 395.441162 289.379761 313.010498 161.756226 7100 25.969734 0.907544 0.992073 0.992638 3.377378 0.814036 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 774.501442 1983.602531 661.713745 0.066416101 0.158221911 0.019750186 0.419765509 3.362808816 8.01116039 -0.37699325 0.526702177 0.903695427
14 5370 21780 257.180847 63.955883 244.786713 129.102585 189.319046 9400 29.25588 0.960908 0.992805 0.996529 1.992066 0.531218 223.729736 39.75 166.070709 129.223434 169.256897 3700 29.25588 0.932049 0.995064 0.996941 1.73134 0.461691 1001.760864 345.191162 234.610428 274.903564 167.935287 4600 29.25588 0.8825 0.990967 0.992714 3.644045 0.822822 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 193.224964 183.979736 656.569702 0.01656969 0.01467513 0.019596652 1.129100026 0.845536772 0.748859049 0.052732417 -0.0728675 -0.125599918
15 5620 21770 283.685394 55.14706 236.201263 148.417557 184.033096 8900 25.969734 0.947031 0.993355 0.996796 1.911401 0.509707 236.716415 15.352942 197.105179 42.80423 181.77066 6700 25.969734 0.94782 0.994385 0.998466 5.530211 0.851326 991.730347 365.044128 250.835327 286.103912 176.97937 8900 25.969734 0.945505 0.992821 0.992477 3.466329 0.817062 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 228.538334 221.363473 626.686219 0.01959793 0.017657041 0.018704719 1.109921517 1.047753246 0.943988588 0.045292271 0.020259015 -0.025033256
16 5870 21780 437.263153 80.485291 1230.158325 183.999069 180.89296 9500 29.25588 0.93995 0.982704 0.994156 2.376442 0.633718 484.166656 126.926468 1152.286865 506.813385 184.205978 12000 29.25588 0.951567 0.982506 0.983368 0.955315 0.254751 1803.514282 309.588226 6067.54248 259.064453 179.834061 10500 29.25588 0.941598 0.97554 0.992279 6.961643 0.854847 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 356.777862 357.240188 1493.926056 0.0305949 0.028495238 0.044589248 1.073684696 0.686149734 0.639060737 0.030876763 -0.163581101 -0.194457864
17 6130 21790 296.531921 57.264706 272.11377 143.170776 180.187729 9400 43.015694 0.929842 0.991745 0.997276 2.071176 0.552314 289.663788 78.852943 290.668762 205.558746 189.655014 11600 43.015694 0.96175 0.990936 0.994873 1.409153 0.375774 1022.591858 358.632355 331.73468 287.61615 171.684311 9800 43.015694 0.941232 0.989159 0.991508 3.555405 0.819995 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 239.267215 210.810845 663.959503 0.020517968 0.016815312 0.019817216 1.2201955 1.035360771 0.848520397 0.086429419 0.015091706 -0.071337713
18 6380 21770 194.158539 70.367645 139.144516 177.481125 182.64415 8200 35.88023 0.956937 0.9963 0.994324 1.093967 0.291725 260.322571 26.794117 226.067657 85.788277 182.295258 6200 35.88023 0.951563 0.992699 0.997185 3.034477 0.80137 899.188416 359.147064 252.465042 336.32196 180.54068 6900 35.88023 0.945432 0.99337 0.989265 2.673594 0.712958 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 123.790894 233.528454 540.041352 0.010615485 0.01862738 0.016118628 0.569886106 0.658584926 1.155643064 -0.244211931 -0.181388214 0.062823717
19 2080 22010 185.524994 79.779411 159.956009 181.23233 183.166229 8000 15.527142 0.960822 0.995239 0.994255 1.023686 0.272983 217.136993 38.808823 177.327805 89.779541 176.97937 7300 15.527142 0.950084 0.993912 0.998055 2.418558 0.644949 752.53009 308.926483 211.368851 300.255341 182.992371 8300 15.527142 0.94692 0.993187 0.991478 2.5063 0.668347 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 105.745583 178.32817 443.603607 0.009068039 0.014224333 0.013240248 0.637501861 0.684884393 1.074325324 -0.195518543 -0.16438273 0.031135813
20 2340 22010 333.533966 83.764709 738.634644 172.543579 188.307541 10300 7.352278 0.965206 0.990837 0.994736 1.933042 0.515478 227.782059 83.411766 218.637085 243.371109 187.290573 7800 7.352278 0.960731 0.993286 0.994308 0.935945 0.249585 1242.230713 406.705872 1332.239258 577.850708 178.590759 10400 7.352278 0.963221 0.98394 0.99128 2.149743 0.573265 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 249.769257 144.370293 835.524841 0.021418553 0.011515686 0.024937931 1.859945923 0.858874518 0.461773919 0.269500318 -0.066070282 -0.3355706

Total number of rows: 5184

Table truncated, full table size 2700 Kbytes.




Supplementary data files not provided

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