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Sample GSM11920 Query DataSets for GSM11920
Status Public on May 10, 2004
Title RE3_LT2_H2O2_240 min_3D136_1
Sample type RNA
 
Channel 1
Source name LT2 240 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name LT2 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium LT2 Expression after exposure to 2mM H2O2 for 240min
User - PCheng
Date_of_Scan = Wed Jul 23 14:13:05 2003
Sample_target_source3: LT2 genomic DNA
 
Submission date Oct 21, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE806 LT2_hydrogen_peroxide_2mM_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 1860 3030 2000.403931 79.764709 3657.386963 153.702377 186.950348 15100 20.187901 0.975684 0.898178 0.995163 13.014788 0.841908 258.523071 61.161766 208.45256 134.23288 181.945694 6500 20.187901 0.944541 0.994102 0.996765 1.92593 0.513581 1504.179443 518.382324 388.377258 362.29129 164.29451 3900 20.187901 0.87902 0.988403 0.990051 4.151851 0.837447 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1920.639222 197.361305 985.797119 0.1421421 0.014275678 0.026270591 9.956942285 5.41069299 0.543409094 0.99812599 0.733252892 -0.264873098
2 2110 3030 276.795441 75.308823 233.569565 172.057022 187.460449 13200 20.187901 0.965627 0.992966 0.994202 1.608742 0.428998 245.047623 25.794117 277.175507 86.108841 180.187729 8400 20.187901 0.960083 0.992241 0.997803 2.845789 0.758877 1212.887085 380.838226 380.158081 271.119263 178.590759 6200 20.187901 0.939175 0.989487 0.991692 4.473629 0.845527 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 201.486618 219.253506 832.048859 0.014911562 0.0158592 0.02217334 0.940246802 0.672499586 0.715237302 -0.026758135 -0.172307979 -0.145549844
3 2340 3020 297.740387 88.647057 383.928925 190.920609 187.630173 10400 7.747072 0.964088 0.991821 0.995476 1.559498 0.415866 225.365082 13.720589 197.180222 53.519657 182.295258 6300 7.747072 0.954083 0.994354 0.998032 4.210884 0.838992 1072.6604 442.294128 263.630554 349.281342 170.941086 5300 7.747072 0.929143 0.991364 0.990486 3.07105 0.802802 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 209.09333 211.644493 630.366272 0.015474517 0.01530882 0.016798684 1.010823689 0.921174388 0.911310645 0.004675411 -0.035658146 -0.040333557
4 2590 3020 292.395844 55.558823 265.774506 130.941986 186.609512 14400 7.747072 0.962973 0.991722 0.996689 2.233018 0.595472 284.427185 41.485294 231.18869 115.400856 181.068848 10300 7.747072 0.950559 0.992371 0.996628 2.464689 0.65725 1176.893921 436.794128 264.875488 310.555145 166.412033 6600 7.747072 0.915561 0.992409 0.990051 3.789646 0.827278 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 236.837021 242.941891 740.099793 0.017527764 0.017572645 0.019722982 0.997445985 0.888697483 0.890973042 -0.001110613 -0.05124605 -0.050135436
5 2840 3030 472.007141 61.573528 1004.577759 151.531219 187.290573 14000 2.25402 0.959086 0.986992 0.994652 3.114917 0.804493 588.116638 53.205883 838.973572 136.274033 174.62558 12000 2.25402 0.924115 0.970177 0.996185 4.315691 0.841664 991.486938 344.411774 559.491516 307.25882 183.686844 11500 2.25402 0.949983 0.990555 0.991096 3.226879 0.808681 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 410.433613 534.910755 647.075164 0.03037525 0.038691544 0.017243961 0.785061709 1.761500752 2.24377362 -0.105096205 0.245882833 0.350979038
6 3090 3030 624.291382 96.985291 855.739929 204.015991 185.411636 15100 2.25402 0.952942 0.979286 0.995308 3.060012 0.802372 819.610718 57.558823 1485.92395 160.380463 183.860046 14900 2.25402 0.952611 0.970924 0.996521 5.110415 0.847527 1144.813354 418.220581 249.200928 307.201569 164.488129 7500 2.25402 0.870652 0.991615 0.99192 3.726587 0.825376 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 527.306091 762.051895 726.592773 0.039024713 0.055121278 0.019363032 0.707979113 2.015423682 2.846727602 -0.149979555 0.304366357 0.454345912
7 3340 3030 527.287109 72.735291 1885.886353 192.550171 186.438858 10100 2.25402 0.961429 0.988556 0.994362 2.73844 0.730251 306.082184 35.85294 571.686401 111.168594 178.590759 7300 2.25402 0.923635 0.985542 0.995628 2.753315 0.734217 1109.647827 367.176483 629.820618 290.775604 179.656982 7100 2.25402 0.942141 0.986725 0.9925 3.816165 0.828065 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 454.551818 270.229244 742.471344 0.033640337 0.019546413 0.019786182 1.721049087 1.700193478 0.987882037 0.235793257 0.230498346 -0.005294911
8 3600 3030 326.849548 115.691177 441.512238 223.01738 186.950348 11300 10.310963 0.952013 0.989815 0.993675 1.465579 0.390821 300.563385 8.235294 467.983826 38.702507 182.64415 7100 10.310963 0.945405 0.994194 0.998497 7.765993 0.849738 1281.96875 433.191162 923.296326 389.77063 164.100647 6400 10.310963 0.905103 0.964195 0.989075 3.289034 0.81093 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 211.158371 292.328091 848.777588 0.015627346 0.021144883 0.022619146 0.739060441 0.690890216 0.934822347 -0.131320043 -0.160590957 -0.029270914
9 3860 3030 268.869568 86.970589 263.537354 185.710739 185.583237 9200 20.187901 0.953341 0.991844 0.994743 1.447787 0.386077 252.645569 32.367645 202.456955 123.41568 187.290573 7900 20.187901 0.948299 0.993881 0.995461 2.047111 0.545896 1085.765991 403.558838 392.764343 328.069214 165.260376 4700 20.187901 0.891846 0.985382 0.990807 3.309564 0.811661 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 181.898979 220.277924 682.207153 0.013461926 0.015933299 0.018180196 0.84489257 0.740471992 0.876409638 -0.073198509 -0.130491364 -0.057292855
10 4120 3040 259.532715 76.838234 274.352325 193.582993 189.655014 10700 32.463058 0.961096 0.993279 0.992302 1.340679 0.357514 272.923065 59.117645 215.955261 227.739349 184.723648 9100 32.463058 0.946417 0.99411 0.995087 1.198401 0.319574 1273.686035 426.25 396.655823 406.227203 171.684311 8600 32.463058 0.894979 0.990433 0.991325 3.135403 0.805273 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 182.694481 213.80542 847.436035 0.013520799 0.015465125 0.022583394 0.874276736 0.598705357 0.684800742 -0.058351078 -0.222786856 -0.164435778
11 4380 3050 280.824738 36.823528 244.50647 91.162956 186.609512 9700 45.827381 0.95375 0.990746 0.997231 3.08047 0.803168 270.416656 29.470589 256.057739 83.894653 179.479706 6000 45.827381 0.931897 0.991951 0.997665 3.223288 0.80855 1018.430237 359.676483 282.18277 303.208099 183.686844 8600 45.827381 0.946136 0.992027 0.991585 3.358849 0.813393 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 244.00121 240.946067 658.753754 0.01805797 0.017428282 0.017555184 1.036130225 1.028640265 0.992771217 0.015414343 0.01226352 -0.003150823
12 4620 3040 289.788879 293.897064 288.355713 1888.63916 184.723648 9000 32.463058 0.955827 0.992065 0.995895 0.153438 0.040917 257.196716 131.191177 228.211731 542.298584 172.608841 6100 32.463058 0.914405 0.994019 0.985916 0.474271 0.126472 1312.199951 1249.823486 1601.228027 6731.983398 180.716904 8000 32.463058 0.943863 0.987473 0.985214 0.19492 0.051979 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 -4.108185 126.005539 62.376465 -0.000304037 0.009114322 0.001662276 -0.033358196 -0.182904284 5.483038767 0.739021317
13 4860 3040 885.325989 74.338234 834.409363 143.578735 186.268051 18100 23.507761 0.949326 0.974434 0.996193 6.166136 0.843149 2158.78833 45.205883 1952.291016 107.012703 182.818344 18900 23.507761 0.95834 0.94326 0.996964 20.173197 0.849421 1040.408325 334.102936 366.590302 275.270172 182.818344 12000 23.507761 0.951754 0.989853 0.992905 3.77959 0.826977 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 810.987755 2113.582447 706.305389 0.060019342 0.152881144 0.018822392 0.39258826 3.188720254 8.122301613 -0.406062692 0.50361642 0.909679113
14 5110 3050 264.551025 105.102943 207.816391 211.798279 184.033096 9800 29.961279 0.955446 0.994026 0.993935 1.249071 0.333086 224.153839 46.558823 171.759338 137.542984 177.518127 5200 29.961279 0.909014 0.995361 0.995331 1.6297 0.434587 922.363647 362.235291 231.533798 295.196838 172.608841 6600 29.961279 0.93807 0.993546 0.991447 3.124572 0.804862 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 159.448082 177.595016 560.128356 0.011800387 0.012845929 0.014926908 0.918609072 0.790544613 0.860588728 -0.03686927 -0.102073616 -0.065204347
15 5340 3020 206.265305 88.970589 178.52919 187.847183 189.655014 9800 7.747072 0.961146 0.994476 0.995354 1.098048 0.292813 229.25 49.441177 335.919861 146.668716 178.768906 6000 7.747072 0.941754 0.991058 0.994118 1.563046 0.416812 1065.458984 461.720581 202.650314 335.190735 173.161194 6100 7.747072 0.898046 0.993919 0.99025 3.178665 0.8069 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 117.294716 179.808823 603.738403 0.008680713 0.013006059 0.016089076 0.667436041 0.539540798 0.808378279 -0.175590346 -0.26797571 -0.092385365
16 5580 3010 256.918701 112.838234 222.981644 199.546326 187.460449 12300 20.340067 0.960637 0.99276 0.994797 1.287514 0.343337 303.726196 14.338235 225.232529 49.716091 172.239624 8400 20.340067 0.948465 0.993301 0.999008 6.109213 0.868655 1057.122803 428.352936 217.076187 302.336853 171.684311 5700 20.340067 0.914561 0.99472 0.991844 3.496507 0.818066 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 144.080467 289.387961 628.769867 0.010663065 0.020932215 0.016756141 0.50940928 0.636367557 1.249226471 -0.292933148 -0.19629197 0.096641178
17 5840 3010 283.139343 73.955879 317.916351 151.33075 187.969162 12200 17.746933 0.96423 0.98867 0.994873 1.870997 0.498932 307.583344 81.676468 259.779236 205.818451 178.41243 8400 17.746933 0.946048 0.992775 0.994217 1.49444 0.398517 1130.157837 385.941162 278.330597 311.795227 162.541458 5700 17.746933 0.882659 0.991302 0.991043 3.62468 0.822212 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 209.183464 225.906876 744.216675 0.015481188 0.016340456 0.019832693 0.94741467 0.780589306 0.823915157 -0.023459895 -0.107577403 -0.084117508
18 6090 2990 265.075256 58.029411 271.696899 148.107468 184.033096 9300 37.746876 0.957884 0.988754 0.995117 1.789749 0.477267 190.199997 20.544117 173.339035 84.554924 184.551254 5500 37.746876 0.945588 0.995064 0.996674 2.249425 0.599847 928.19751 342.764709 296.614441 270.535034 182.469788 8100 37.746876 0.955481 0.990479 0.993355 3.43097 0.815871 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 207.045845 169.65588 585.432801 0.015322988 0.012271669 0.015601248 1.248647373 0.982164225 0.786582542 0.096439808 -0.007815889 -0.104255697
19 1830 3270 238.258072 56.529411 193.09166 160.034363 188.307541 9300 12.600864 0.951624 0.994232 0.994492 1.488793 0.397012 219.305084 43.279411 188.466064 117.648201 180.364288 5900 12.600864 0.949605 0.99469 0.996445 1.864075 0.497087 1148.222168 425.470581 222.260605 308.341949 165.452881 3600 12.600864 0.893981 0.992355 0.992195 3.72386 0.825293 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 181.728661 176.025673 722.751587 0.013449321 0.012732414 0.019260668 1.056305686 0.698279056 0.661057746 0.023789618 -0.155970984 -0.179760602
20 2080 3270 266.572815 95.882355 276.321808 191.100159 185.925949 10300 12.600864 0.967661 0.992775 0.995071 1.394938 0.371983 248.132355 26.661764 246.494827 86.408371 181.42009 6800 12.600864 0.938652 0.992943 0.996681 2.871624 0.765766 1066.164185 418.25 262.292267 299.748566 175.896927 6700 12.600864 0.936426 0.992577 0.991882 3.556862 0.820042 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 170.69046 221.470591 647.914185 0.012632409 0.016019568 0.01726632 0.788561171 0.731621406 0.927792837 -0.103164611 -0.135713596 -0.032548985

Total number of rows: 5184

Table truncated, full table size 2703 Kbytes.




Supplementary data files not provided

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