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Sample GSM11921 Query DataSets for GSM11921
Status Public on May 10, 2004
Title RE3_LT2_H2O2_240 min_3D136_2
Sample type RNA
 
Channel 1
Source name LT2 240 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name LT2 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium LT2 Expression after exposure to 2mM H2O2 for 240min
User - PCheng
Date_of_Scan = Wed Jul 23 14:13:05 2003
Sample_target_source3: LT2 genomic DNA
 
Submission date Oct 21, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE806 LT2_hydrogen_peroxide_2mM_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 1930 21800 2786.072021 78.558823 6659.848145 140.345032 187.630173 20800 35.031429 0.966368 0.792641 0.996292 19.85159 0.840672 871.880615 86.411766 1404.43689 172.469955 186.097076 13400 35.031429 0.96093 0.961777 0.995277 5.055261 0.84346 1664.877197 437.514709 872.12262 319.582947 139.115936 5700 35.031429 0.857629 0.982079 0.990379 5.209531 0.861295 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2707.513198 785.468849 1227.362488 0.194068941 0.057279435 0.031260814 3.388108495 6.208057843 1.832307865 0.529957309 0.792955755 0.262998446
2 2180 21810 288.436981 111.411766 241.335434 342.554779 182.992371 11900 45.031281 0.946972 0.992401 0.99427 0.842017 0.224538 297.520538 57.455883 273.246094 159.83606 177.518127 7300 45.031281 0.91989 0.992935 0.995781 1.861411 0.496376 1377.945068 378.485291 418.484131 277.408173 154.921173 9100 45.031281 0.903719 0.986542 0.992516 4.967212 0.856471 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 177.025215 240.064655 999.459777 0.012688801 0.017506446 0.025456152 0.724807369 0.498457148 0.687709823 -0.1397774 -0.302372172 -0.162594772
3 2430 21800 359.276917 153.661758 477.225128 467.66568 188.307541 13000 35.031429 0.96777 0.98642 0.984634 0.768235 0.204863 466.186279 46.838234 644.175232 158.144806 177.518127 10200 35.031429 0.94361 0.98333 0.994125 2.947844 0.786092 1236.202271 358.352936 490.058838 249.286484 175.715866 8900 35.031429 0.901166 0.985252 0.993118 4.958962 0.8563 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 205.615159 419.348045 877.849335 0.014738069 0.030580486 0.022358745 0.481943581 0.659163519 1.367719264 -0.3170038 -0.181006836 0.135996964
4 2680 21800 345.025208 85.544121 312.33252 168.009537 186.609512 11900 35.031429 0.966706 0.99028 0.995087 2.053605 0.547628 227.073685 59.60294 299.669464 162.833694 182.469788 9500 35.031429 0.943145 0.991035 0.995354 1.394513 0.37187 1621.305298 398.514709 2155.287842 301.395142 181.77066 13100 35.031429 0.94626 0.983849 0.992134 5.379335 0.851326 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 259.481087 167.470745 1222.790589 0.018599067 0.012212616 0.031144368 1.522938791 0.597188779 0.392129206 0.182682449 -0.223888361 -0.40657081
5 2920 21800 395.700745 205.705887 426.117035 722.439026 185.411636 13700 36.371414 0.95725 0.987221 0.986389 0.547729 0.146061 623.569336 119.279411 915.104309 311.452972 190.826248 13700 36.371414 0.969361 0.969429 0.994034 2.00213 0.533901 1299.034424 432.808838 567.914551 318.722595 151.38797 5800 36.371414 0.843371 0.977577 0.991547 4.075753 0.835411 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 189.994858 504.289925 866.225586 0.013618438 0.036774777 0.022062689 0.370320069 0.617261029 1.666831157 -0.431422752 -0.209531142 0.22189161
6 3170 21790 847.222839 150.882355 1830.497559 317.146576 188.476501 18400 26.874977 0.968459 0.966187 0.990746 2.671392 0.712371 1509.714966 99.5 4282.146484 319.086212 185.583237 19300 26.874977 0.956206 0.869141 0.990417 4.73137 0.844394 1169.86792 352.985291 1128.586426 354.702728 188.307541 15900 26.874977 0.961036 0.964516 0.990959 3.298164 0.811255 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 696.340484 1410.214966 816.882629 0.049912244 0.102838345 0.020805928 0.48534663 2.398943405 4.94274248 -0.313947982 0.380020002 0.693967984
7 3430 21800 715.90686 248.352936 1150.674561 737.121521 186.097076 16100 35.031429 0.959927 0.96653 0.98629 0.97122 0.258992 846.48468 117.867645 1720.283691 352.114532 190.826248 16300 35.031429 0.969268 0.954346 0.990906 2.404004 0.641068 1239.267822 369.014709 1375.414429 397.407654 185.067963 11200 35.031429 0.96066 0.977524 0.99118 3.118379 0.804626 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 467.553924 728.617035 870.253113 0.033513297 0.05313358 0.02216527 0.630736666 1.511973359 2.397154694 -0.200151922 0.179544139 0.379696061
8 3650 21790 805.815613 135.25 968.169189 557.450684 186.609512 17900 38.905293 0.954859 0.972672 0.991737 1.445537 0.385477 1349.751343 257.485291 2039.142944 865.881958 185.411636 18900 38.905293 0.956158 0.949371 0.987198 1.558817 0.415684 1132.648682 389.588226 493.291565 352.574036 180.716904 14800 38.905293 0.943443 0.988152 0.991249 3.212513 0.808154 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 670.565613 1092.266052 743.060456 0.048064755 0.079652277 0.018925684 0.603432276 2.539657476 4.208686837 -0.219371464 0.404775147 0.624146612
9 3910 21790 254.849457 87.397057 218.466934 159.523834 185.239883 9300 31.905222 0.956758 0.993408 0.996414 1.597564 0.426017 222.519485 47.014706 246.392212 121.406494 177.33873 7700 31.905222 0.947246 0.994804 0.995705 1.832847 0.488759 1240.478271 449.720581 366.945343 349.691925 165.645157 4600 31.905222 0.894168 0.985504 0.990242 3.547346 0.819734 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 167.4524 175.504779 790.75769 0.012002641 0.012798489 0.020140528 0.937817046 0.595944712 0.635459459 -0.027881878 -0.224794029 -0.196912152
10 4160 21790 300.220184 56.279411 294.300323 163.004517 182.64415 10900 31.905222 0.93749 0.991684 0.996849 1.841791 0.491144 260.471436 60.426472 298.84671 302.706421 176.799423 7000 31.905222 0.936693 0.989967 0.996353 0.860475 0.22946 1188.939697 374.588226 468.63028 292.461517 172.054718 11600 31.905222 0.925007 0.985237 0.991867 4.065286 0.835127 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 243.940773 200.044964 814.351471 0.01748517 0.014588055 0.02074146 1.198595011 0.843005734 0.703328252 0.078672466 -0.074169471 -0.152841937
11 4420 21790 259.47525 54.617645 196.117188 153.806244 183.339935 10100 26.874977 0.960122 0.994614 0.994583 1.687027 0.449874 247.945953 46.39706 299.694092 125.161644 177.159134 7400 26.874977 0.914403 0.991661 0.99633 1.981006 0.528268 1219.162842 365.147064 512.771851 273.792847 163.906555 8600 26.874977 0.883544 0.987793 0.99202 4.452866 0.84503 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 204.857605 201.548893 854.015778 0.014683769 0.014697727 0.021751706 0.999050328 0.67506286 0.675704558 -0.000412633 -0.170655785 -0.170243152
12 4670 21790 242.564102 45.514706 232.38414 117.382462 190.826248 11700 26.874977 0.966533 0.993324 0.996521 2.066442 0.551051 230.291672 33.64706 203.415649 94.355438 175.353195 7200 26.874977 0.923555 0.993973 0.997322 2.440683 0.650849 897.125854 307.147064 352.181885 286.869415 187.290573 14300 26.874977 0.970183 0.989807 0.991539 3.127297 0.804965 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 197.049396 196.644612 589.97879 0.014124093 0.014340088 0.015026708 0.984937673 0.939932632 0.954306711 -0.006591251 -0.026903273 -0.020312022
13 4930 21780 1304.720947 61.235294 1053.074341 165.929062 175.17157 17200 15.032314 0.926111 0.968575 0.994247 7.863125 0.863324 3019.491699 63.35294 2055.202148 141.6884 176.97937 18100 15.032314 0.940667 0.942398 0.99649 21.31079 0.860038 1204.505615 419.955872 356.137695 315.320282 157.569595 8900 15.032314 0.903376 0.988197 0.991539 3.819943 0.828177 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1243.485653 2956.138759 784.549743 0.089130477 0.215573104 0.019982412 0.413458244 4.460446273 10.78814206 -0.383568344 0.649378313 1.032946657
14 5180 21800 233.539474 56.661766 194.916351 140.02298 179.479706 7600 35.031429 0.936864 0.994469 0.995064 1.667865 0.444764 229.625 12.308824 171.922623 52.784058 176.077789 4800 35.031429 0.931414 0.994888 0.998108 4.350272 0.842526 1058.444458 399.176483 243.749985 416.98819 173.894928 6300 35.031429 0.945797 0.993263 0.990517 2.538308 0.676882 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 176.877708 217.316176 659.267975 0.012678228 0.015847538 0.016791497 0.80001244 0.755038575 0.943783543 -0.09690326 -0.12203086 -0.0251276
15 5420 21780 208.168533 60.838234 156.522812 161.165131 182.818344 8900 17.934582 0.939203 0.995125 0.996391 1.291647 0.344439 199.841263 44.735294 193.128342 123.853264 186.779999 6300 17.934582 0.958359 0.994438 0.996292 1.613532 0.430275 1141.279053 327.779419 401.490417 279.244019 171.127197 8600 17.934582 0.924138 0.987091 0.993462 4.087031 0.835716 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 147.330299 155.105969 813.499634 0.010560331 0.011310929 0.020719764 0.933639574 0.50967429 0.545900478 -0.029820748 -0.292707273 -0.262886525
16 5660 21770 267.105774 81.294121 225.003769 139.368088 184.033096 10400 20.413542 0.940771 0.993614 0.996292 1.916549 0.51108 397.284088 31.161764 320.145416 94.383247 176.97937 8800 20.413542 0.935259 0.989456 0.996979 4.209265 0.83895 918.481812 317.514709 329.46579 294.10849 182.469788 11000 20.413542 0.945971 0.990334 0.99192 3.122935 0.804799 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 185.811653 366.122324 600.967103 0.013318595 0.02669906 0.015306579 0.498841331 0.870122233 1.744286569 -0.302037571 -0.060419734 0.241617837
17 5920 21780 283.14151 67.426468 351.162994 159.883286 185.067963 10600 17.934582 0.96167 0.993584 0.995026 1.770926 0.472247 250.824738 42.35294 231.947952 110.665123 186.779999 9700 17.934582 0.962855 0.991402 0.996323 2.26652 0.604405 951.721863 261.661774 393.654999 241.211288 187.630173 15100 17.934582 0.969657 0.98838 0.992455 3.945594 0.831808 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 215.715042 208.471798 690.060089 0.015462008 0.015202572 0.017575769 1.017065237 0.879734327 0.864973352 0.00734881 -0.055648462 -0.062997272
18 6170 21760 252.600006 30.191177 225.437393 102.998947 184.378693 9000 10.973547 0.943102 0.993835 0.997536 2.452452 0.653987 204.596161 41.676472 187.420288 118.491066 180.54068 5200 10.973547 0.930786 0.994408 0.996284 1.72668 0.460448 895.923096 371.661774 262.059784 331.734741 172.793152 5200 10.973547 0.910168 0.992256 0.989822 2.700721 0.720192 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 222.408829 162.919689 524.261322 0.015941804 0.011880736 0.013352889 1.341819638 1.193884251 0.88975017 0.127694144 0.076962223 -0.05073192
19 1900 22040 533.055542 133.867645 1030.899414 312.637787 190.826248 12600 38.905293 0.970183 0.969582 0.993729 1.705026 0.454674 688.968018 75.779411 1986.121094 167.414841 185.411636 12500 38.905293 0.960441 0.972862 0.994087 4.115334 0.836477 1295.567627 476.191162 519.146973 339.765289 170.381531 3700 38.905293 0.920184 0.983055 0.989487 3.813125 0.827976 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 399.187897 613.188607 819.376465 0.028612962 0.044716092 0.020869446 0.639880655 1.371045596 2.142658298 -0.193901019 0.137051898 0.330952917
20 2160 22030 275.347382 75.823532 239.135483 174.360657 187.460449 9500 24.846085 0.951364 0.993141 0.994072 1.579183 0.421115 246.63768 113.294121 208.105804 381.348694 180.010986 6900 24.846085 0.940861 0.994614 0.995216 0.646751 0.172467 1051.908203 480.838226 308.648499 688.299011 181.068848 9800 24.846085 0.942472 0.990562 0.978981 1.528272 0.407539 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 199.52385 133.343559 571.069977 0.014301456 0.00972393 0.014545102 1.470748677 0.983248983 0.668536371 0.167538466 -0.007336494 -0.17487496

Total number of rows: 5184

Table truncated, full table size 2708 Kbytes.




Supplementary data files not provided

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