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Sample GSM11923 Query DataSets for GSM11923
Status Public on May 10, 2004
Title RE3_LT2_H2O2_20 min_3D148_1
Sample type RNA
 
Channel 1
Source name LT2 20 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name LT2 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium LT2 Expression after exposure to 2mM H2O2 for 20min
User - PCheng
Date_of_Scan = Tue Jul 29 13:17:28 2003
Sample_target_source3: LT2 genomic DNA
 
Submission date Oct 21, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE806 LT2_hydrogen_peroxide_2mM_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2290 2940 478.476746 135.411758 865.389954 232.352417 190.32518 17200 27.642735 0.966025 0.986687 0.992905 2.059272 0.549139 301.388885 131.529419 244.925583 216.041977 187.460449 12600 27.642735 0.960808 0.993057 0.994797 1.395048 0.372013 1434.085693 480.926483 540.363525 340.666168 152.226685 3500 27.642735 0.901279 0.977058 0.990646 4.209651 0.83896 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 343.064988 169.859466 953.15921 0.029046257 0.014778976 0.025953699 1.965376791 1.119156748 0.569436229 0.293445823 0.048890918 -0.244554906
2 2540 2940 370.858093 128.470581 374.781769 216.386093 190.492355 14800 27.642735 0.96654 0.987976 0.993195 1.713872 0.457033 442.842987 102.014709 722.828735 225.080048 186.609512 12100 27.642735 0.953474 0.983665 0.993111 1.967491 0.524664 1177.113647 481.441162 294.7323 329.74588 164.100647 4400 27.642735 0.89237 0.988358 0.990295 3.56976 0.820459 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 242.387512 340.828278 695.672485 0.020522205 0.029654474 0.018942559 0.692044148 1.083391398 1.565494631 -0.1598662 0.034785383 0.194651582
3 2790 2940 343.942871 149.882355 292.073273 264.882446 192.321655 14000 27.642735 0.970768 0.99086 0.995827 1.298474 0.34626 307.801666 92.941177 273.309662 179.237839 187.460449 12100 27.642735 0.959526 0.992561 0.995262 1.717281 0.457942 1189.680908 448.661774 236.214996 348.262909 175.534622 4700 27.642735 0.917878 0.993454 0.989502 3.416043 0.815363 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 194.060516 214.860489 741.019134 0.016430507 0.018694384 0.020177309 0.878900683 0.814306175 0.926505339 -0.056060198 -0.089212272 -0.033152074
4 3040 2940 1057.763672 159.161758 5678.290527 271.351105 191.990341 16500 27.642735 0.973803 0.979126 0.991348 3.898137 0.830455 729.472839 63.64706 3030.446289 142.753082 184.033096 12900 27.642735 0.965155 0.977509 0.996437 5.110032 0.847213 4226.927734 511.588226 11683.29297 350.795013 172.608841 6900 27.642735 0.917004 0.529198 0.991325 12.049566 0.604797 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 898.601914 665.825779 3715.339508 0.07608186 0.057931558 0.101165474 1.313305954 0.752053613 0.572641592 0.118365913 -0.123751198 -0.242117111
5 3290 2940 281.597229 121.044121 265.813354 252.815689 190.157852 14400 27.642735 0.965923 0.990318 0.992233 1.113844 0.297025 247.844666 121.779411 213.997467 192.809387 182.295258 10300 27.642735 0.948481 0.994125 0.995193 1.285439 0.342784 1160.291626 428.867645 313.215973 303.003876 158.977386 4800 27.642735 0.889913 0.98661 0.991592 3.829296 0.828453 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 160.553108 126.065255 731.423981 0.013593538 0.01096857 0.019916041 1.239317238 0.682542172 0.550740482 0.09318249 -0.16587051 -0.259053
6 3530 2940 314.524139 144.5 267.780914 292.579651 191.824478 14500 20.013538 0.970802 0.991653 0.990883 1.075003 0.286668 234.220337 53.720589 223.387177 144.389175 188.813965 11800 20.013538 0.960912 0.993355 0.995567 1.622146 0.432572 1146.25293 464.852936 308.601135 393.466553 174.989761 8700 20.013538 0.926244 0.990608 0.989189 2.913216 0.776857 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 170.024139 180.499748 681.399994 0.014395421 0.015704756 0.018553931 0.916628095 0.775869049 0.846438216 -0.037806836 -0.110211573 -0.072404737
7 3780 2930 262.31012 100.352943 247.9207 188.655869 191.990341 15800 14.11759 0.971366 0.992348 0.995407 1.390416 0.370778 299.942871 106.088234 257.042542 237.446533 185.583237 10500 14.11759 0.954002 0.991547 0.994171 1.263202 0.336854 1166.166626 401.705872 290.540894 283.951538 162.932648 6000 14.11759 0.871152 0.991722 0.993027 4.106921 0.836251 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 161.957177 193.854637 764.460754 0.013712416 0.016866726 0.020815604 0.81298622 0.658756589 0.810292442 -0.089916816 -0.181275028 -0.091358212
8 4030 2930 376.440948 167.264709 534.84967 231.140503 190.492355 12700 14.11759 0.970601 0.988037 0.993713 1.628624 0.4343 272.29126 94.558823 225.701202 162.390671 190.32518 10300 14.11759 0.965064 0.994301 0.995285 1.676767 0.447138 1072.915283 439.661774 238.551102 345.191284 171.49881 5900 14.11759 0.92697 0.993828 0.988968 3.108176 0.804235 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 209.176239 177.732437 633.253509 0.017710309 0.015463981 0.017242944 1.145261956 1.027104693 0.896829488 0.058904834 0.011614714 -0.04729012
9 4290 2930 549.797974 201.073532 309.01416 236.823975 181.068848 9900 23.725206 0.941315 0.990898 0.994492 2.321547 0.619079 300.43219 79.455879 364.972534 163.251144 183.860046 11800 23.725206 0.947847 0.992195 0.99543 1.840307 0.490748 1181.323486 455.955872 170.642059 326.742889 161.756226 3400 23.725206 0.864754 0.995323 0.990547 3.615453 0.82192 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 348.724442 220.976311 725.367614 0.029525426 0.019226504 0.019751131 1.535662746 1.494872647 0.973438114 0.186295849 0.174604195 -0.011691654
10 4550 2940 426.078003 221.573532 298.683075 380.297729 191.824478 14100 36.437618 0.966442 0.990761 0.991386 1.12038 0.298768 276.026154 112.058823 256.970581 194.502411 190.492355 15300 36.437618 0.974357 0.992371 0.995399 1.41914 0.378437 1240.058838 480.029419 296.544983 332.599854 179.656982 6800 36.437618 0.933653 0.991013 0.990158 3.728381 0.825431 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 204.504471 163.967331 760.029419 0.017314765 0.014266319 0.020694942 1.213681298 0.836666485 0.689362592 0.08410466 -0.077447627 -0.161552287
11 4810 2950 4278.70459 6061.5 8713.148438 15216.18457 187.460449 8800 49.925087 0.965461 0.630844 0.500008 0.281194 0.074985 6414.293457 9506.764648 13356.43164 21075.79688 186.268051 12600 49.925087 0.959255 0.503838 0.500008 0.304344 0.081158 6406.384766 7608.970703 14268.04688 18170.02734 184.551254 10400 49.925087 0.944799 0.509254 0.500008 0.35258 0.094021 1 1 1 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 1 -1782.79541 -3092.471191 -1202.585937 -0.150943804 -0.269066894 -0.032745373 0.560989877 4.609622438 8.216944059 -0.251044975 0.663665355 0.91471033
12 5050 2940 38612 18852.41211 20602.82813 25063.95508 141.385513 2900 36.437618 0.738014 0.62278 0.500008 1.540539 0.41081 65535 31969.2207 0 28542.13477 129.640915 100 36.437618 0.691152 1 0.500008 2.296079 0.430114 43050.54688 24664.9707 16787.39258 26898.76758 155.536346 4200 36.437618 0.821751 0.656334 0.501831 1.600465 0.426791 1 1 1 0 0 0 1 0 0 1 0 0 1 1 1 0 0 0 1 19759.58789 33565.7793 18385.57617 1.672983533 2.920460511 0.500623301 0.572849222 3.34180117 5.833648786 -0.241959672 0.523980607 0.765940279
13 5290 2930 16726.14258 4761.779297 21194.57617 12601.89063 164.100647 19000 23.725206 0.921924 0.518211 0.500008 1.327272 0.353939 34720.29297 14075.57324 20057.6875 20353.98242 170.007477 22600 23.725206 0.941108 0.591423 0.501343 1.705823 0.431263 25008.37305 7845.293945 24049.96094 15927.61231 150.121094 15800 23.725206 0.904386 0.522598 0.500008 1.570127 0.418701 1 1 1 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 1 11964.36328 20644.71973 17163.0791 1.012985841 1.796236822 0.467335765 0.563948934 2.16757611 3.843568061 -0.24876022 0.335974356 0.584734576
14 5540 2950 360.113342 135.176468 290.876007 196.895752 183.686844 15000 34.137314 0.955286 0.991364 0.9944 1.828954 0.487721 312.630127 168.617645 290.347565 299.455322 190.992981 14600 34.137314 0.970656 0.993408 0.990349 1.043996 0.278399 1070.803955 389.897064 264.47525 301.837708 174.443207 5100 34.137314 0.929966 0.991875 0.991638 3.547615 0.819742 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 224.936874 144.012482 680.906891 0.019044713 0.012530106 0.018540504 1.519916396 1.027194995 0.675823353 0.1818197 0.011652895 -0.170166805
15 5780 2930 321.129028 108.779411 281.957306 184.468079 189.487106 15500 14.11759 0.960136 0.992477 0.994286 1.740838 0.464223 284.100006 96.970589 239.591217 197.079575 187.799744 13000 14.11759 0.963324 0.992844 0.994736 1.44155 0.384413 1287.517212 464.102936 191.564728 297.189514 159.377335 2900 14.11759 0.905597 0.992355 0.99144 4.33231 0.831797 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 212.349617 187.129417 823.414276 0.017978989 0.016281585 0.022420857 1.104253024 0.801886788 0.726180296 0.043068597 -0.095886942 -0.138955539
16 6030 2930 318.973328 189.279419 261.632233 328.9133 191.990341 15000 14.11759 0.968887 0.991577 0.991776 0.969779 0.258608 288.148163 123.161766 272.041809 242.238907 188.645309 10800 14.11759 0.971601 0.991852 0.994667 1.189521 0.317205 1220.459473 509.647064 231.143967 358.934662 146.036865 3700 14.11759 0.85483 0.992378 0.989532 3.400227 0.814823 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 129.693909 164.986397 710.812409 0.010980784 0.014354985 0.019354806 0.764945725 0.567341494 0.741675488 -0.116369378 -0.246155452 -0.129786074
17 6290 2940 404.520844 151.029419 304.870056 211.516983 188.138428 14400 27.642735 0.961603 0.990295 0.995308 1.912475 0.509993 308.935699 66.147057 293.167633 149.495102 187.969162 14000 27.642735 0.955838 0.991478 0.996033 2.066527 0.551074 1454.172363 519.058838 240.281845 360.754974 105.851357 2900 27.642735 0.89268 0.992798 0.988861 4.030914 0.831797 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 253.491425 242.788642 935.113525 0.021462339 0.021124331 0.025462331 1.016000886 0.84290553 0.829630703 0.006894087 -0.074221097 -0.081115184
18 6530 2930 383.493042 171.132355 283.90744 279.379272 187.799744 14400 14.11759 0.96441 0.990646 0.991585 1.372661 0.366043 331.844818 152.794113 217.581757 218.272491 187.630173 11600 14.11759 0.956782 0.993744 0.994034 1.520324 0.40542 1142.448242 496.867645 190.103271 359.558044 165.260376 2900 14.11759 0.894146 0.995148 0.989304 3.177368 0.806852 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 212.360687 179.050705 645.580597 0.017979926 0.015578679 0.0175786 1.15413674 1.022830385 0.886229811 0.062257266 0.009803621 -0.052453645
19 2250 3170 336.408813 183.117645 327.652252 266.150146 190.32518 15900 17.530935 0.965807 0.99276 0.993172 1.263981 0.337062 295.645447 128.397064 277.981018 229.12085 190.992981 11000 17.530935 0.974138 0.99295 0.993248 1.290347 0.344093 1329.576904 461.338226 346.59787 304.527374 154.715576 2600 17.530935 0.866335 0.990402 0.991325 4.366034 0.821611 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 153.291168 167.248383 868.238678 0.012978692 0.014551794 0.023641387 0.891896348 0.548981833 0.615522011 -0.049685614 -0.260442027 -0.210756412
20 2510 3170 302.317871 122.838234 282.219604 307.950104 193.64119 15100 8.420974 0.974003 0.991364 0.993484 0.981711 0.261789 260.798492 63.470589 233.840012 131.355789 193.476746 13400 8.420974 0.975227 0.993614 0.996368 1.985436 0.52945 1164.854492 446.676483 315.243011 321.242371 171.127197 5500 8.420974 0.911902 0.990616 0.991287 3.626092 0.822257 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 179.479637 197.327903 718.178009 0.015195989 0.017168925 0.019555365 0.885086796 0.777075199 0.877964967 -0.053014138 -0.109536952 -0.056522813

Total number of rows: 5184

Table truncated, full table size 2712 Kbytes.




Supplementary data files not provided

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