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Sample GSM11924 Query DataSets for GSM11924
Status Public on May 10, 2004
Title RE3_LT2_H2O2_20 min_3D148_2
Sample type RNA
 
Channel 1
Source name LT2 20 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name LT2 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium LT2 Expression after exposure to 2mM H2O2 for 20min
User - PCheng
Date_of_Scan = Tue Jul 29 13:17:28 2003
Sample_target_source3: LT2 genomic DNA
 
Submission date Oct 21, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE806 LT2_hydrogen_peroxide_2mM_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2150 21650 677.767029 131.191177 989.669617 218.697586 188.982483 17600 31.122604 0.955617 0.97377 0.993622 3.099106 0.803887 299.330444 87.352943 234.153259 203.205124 185.754669 11500 31.122604 0.961663 0.9925 0.99292 1.473046 0.392812 1249.295044 467.014709 364.747833 306.486603 170.194611 6100 31.122604 0.907695 0.989731 0.990517 4.076182 0.835423 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 546.575852 211.977501 782.280335 0.04752089 0.019607579 0.021933025 2.423597998 2.16663635 0.893975136 0.384460585 0.335786025 -0.04867456
2 2400 21650 301.739441 120.411766 289.357422 222.738403 190.826248 14200 31.122604 0.965614 0.991066 0.994759 1.354681 0.361248 364.192322 122.573532 365.795624 265.11795 190.32518 10400 31.122604 0.96635 0.990204 0.991615 1.373699 0.36632 1167.342896 479.705872 193.76152 365.927734 162.149323 3500 31.122604 0.873024 0.99437 0.988777 3.190091 0.807325 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 181.327675 241.61879 687.637024 0.015765154 0.022349351 0.019279483 0.7053965 0.817716646 1.159229803 -0.151566699 -0.087397161 0.064169538
3 2650 21660 305.531464 137.161758 268.747009 275.638824 193.147415 14300 25.143501 0.974182 0.991676 0.991554 1.108449 0.295586 245.421051 61.955883 250.44902 121.614075 183.686844 9500 25.143501 0.948108 0.99408 0.996376 2.018032 0.538142 1120.717041 422.352936 372.723633 294.323547 164.87471 5300 25.143501 0.901623 0.989128 0.991539 3.807772 0.827817 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 168.369706 183.465168 698.364105 0.014638551 0.016970234 0.019580241 0.862601568 0.747618504 0.866702 -0.064189757 -0.126319958 -0.062130201
4 2900 21660 312.661957 110.764709 270.339569 176.711349 185.925949 14200 25.143501 0.964754 0.990608 0.996002 1.769337 0.471823 216.897964 61.60294 174.41362 155.150116 185.754669 9800 25.143501 0.956225 0.994896 0.995377 1.397988 0.372797 808.191101 309.426483 259.167877 296.403442 187.630173 15700 25.143501 0.960465 0.992432 0.99202 2.726659 0.727109 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 201.897248 155.295024 498.764618 0.017553532 0.014364541 0.013984011 1.222004406 1.255257311 1.027211772 0.087072772 0.09873276 0.011659988
5 3150 21660 349.78302 158.911758 253.895966 302.60968 186.268051 10600 25.143501 0.96712 0.992859 0.990273 1.155888 0.308237 261.595947 90.882355 292.534698 180.802322 181.945694 9900 25.143501 0.94523 0.989944 0.994652 1.446862 0.38583 1143 405.867645 374.899231 308.79129 168.50296 6000 25.143501 0.901899 0.99218 0.991547 3.701529 0.824608 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 190.871262 170.713592 737.132355 0.016594901 0.015790734 0.020667198 1.050926534 0.802958442 0.76404812 0.021572357 -0.095306931 -0.116879289
6 3390 21650 365.798615 134.529419 358.620789 211.415451 187.969162 14400 24.995768 0.96289 0.992538 0.993446 1.730236 0.461396 239.128006 78.544121 202.223572 169.539536 185.239883 12500 24.995768 0.961002 0.994392 0.995987 1.410456 0.376122 989.93634 343.294128 297.106018 318.116272 178.946869 11000 24.995768 0.947052 0.991081 0.990227 3.11187 0.804377 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 231.269196 160.583885 646.642212 0.020107215 0.014853752 0.018130099 1.353679159 1.10905156 0.819286869 0.131515743 0.044951737 -0.086564006
7 3640 21650 345.880005 194.602936 259.976105 381.143066 189.487106 12500 24.995768 0.967149 0.992691 0.988121 0.907481 0.241995 280.710541 69.397057 242.019333 132.23082 187.969162 11400 24.995768 0.958288 0.993515 0.996712 2.122883 0.566102 1126.531616 455.647064 242.276062 342.282532 176.619293 7900 24.995768 0.927519 0.992943 0.990646 3.291233 0.811008 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 151.277069 211.313484 670.884552 0.013152467 0.019546159 0.018809789 0.67289268 0.699235239 1.039148234 -0.172054196 -0.155376693 0.016677504
8 3890 21650 317.151733 158.764709 272.059784 373.745148 186.438858 14500 24.995768 0.956991 0.992599 0.991432 0.848578 0.226287 297.90741 135.382355 263.712097 355.534027 185.411636 10800 24.995768 0.953158 0.992355 0.988525 0.837915 0.223444 1012.260864 363.588226 340.880585 331.48053 176.077789 6900 24.995768 0.927661 0.990021 0.989899 3.053757 0.802127 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 158.387024 162.525055 648.672638 0.013770627 0.015033307 0.018187027 0.916007838 0.757167592 0.826595102 -0.03810081 -0.120807983 -0.082707172
9 4150 21650 303.256958 92.455879 266.264526 176.955048 191.824478 14400 31.122604 0.973062 0.99221 0.994598 1.713751 0.457 311.939392 69.808823 259.634949 141.385605 186.609512 9900 31.122604 0.962209 0.992989 0.996231 2.206302 0.588347 1139.090942 435.044128 301.760071 299.636871 159.975372 3300 31.122604 0.852662 0.987869 0.991425 3.801571 0.827633 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 210.801079 242.130569 704.046814 0.018327657 0.02239669 0.019739569 0.818319913 0.928473023 1.134608859 -0.08707688 -0.03223071 0.05484617
10 4410 21660 349.323944 151.941177 302.461395 243.706268 186.950348 14200 34.293201 0.961593 0.991615 0.993446 1.433381 0.382235 257.842987 99.411766 242.867004 245.744873 184.723648 12100 34.293201 0.960586 0.991898 0.991982 1.04923 0.279795 1101.775024 456.808838 244.935791 458.81311 169.820145 8000 34.293201 0.899256 0.992859 0.990746 2.401359 0.640362 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 197.382767 158.431221 644.966186 0.01716103 0.014654634 0.018083108 1.171030957 0.949008898 0.81040462 0.068568376 -0.022729716 -0.091298092
11 4670 21670 398.480377 151.411758 275.846527 229.903687 182.818344 10200 42.230686 0.946091 0.992477 0.994278 1.733249 0.4622 291.797974 88.470589 239.918488 207.137665 190.492355 9900 42.230686 0.967962 0.991806 0.993759 1.408715 0.375657 1095.095215 386.573517 231.167679 334.391693 169.444855 8400 42.230686 0.934346 0.993248 0.991417 3.274888 0.810422 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 247.068619 203.327385 708.521698 0.021480862 0.018807457 0.019865033 1.142146005 1.081340404 0.946761972 0.057721625 0.033962431 -0.023759195
12 4910 21660 325.370117 159.558823 282.426392 256.958527 189.150833 15400 34.293201 0.960681 0.991249 0.992905 1.266236 0.337663 276.658539 116.147057 229.698013 199.039505 185.583237 12300 34.293201 0.963017 0.992317 0.994324 1.389968 0.370658 938.40741 351.455872 299.430969 338.16629 176.799423 13500 34.293201 0.930076 0.991722 0.990448 2.774988 0.739997 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 165.811294 160.511482 586.951538 0.014416115 0.014847055 0.016456534 0.970974706 0.876011609 0.902198176 -0.012792083 -0.057490139 -0.044698055
13 5150 21660 500.49231 196.75 338.874817 303.562744 186.097076 13000 25.143501 0.955242 0.991905 0.990417 1.648728 0.439661 783.375 112.397057 791.70752 206.675903 182.818344 17600 25.143501 0.942083 0.971115 0.994423 3.790355 0.827299 1319.711914 441.323517 299.241913 374.753937 155.945114 5900 25.143501 0.881069 0.992027 0.989838 3.521542 0.818891 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 303.74231 670.977943 878.388397 0.026408238 0.062064385 0.024627636 0.425497449 1.07230097 2.520111398 -0.37110304 0.030316699 0.401419739
14 5400 21670 291.643951 86.720589 304.896362 170.735092 188.138428 13200 22.265999 0.969447 0.990082 0.995247 1.708166 0.455511 254.862076 40.088234 235.203476 127.822258 184.378693 8700 22.265999 0.957735 0.991539 0.996368 1.993879 0.531701 981.180542 338.764709 245.400818 272.993134 178.590759 7200 22.265999 0.957145 0.992813 0.992714 3.594158 0.821242 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 204.923362 214.773842 642.415833 0.017816632 0.019866236 0.018011603 0.896829734 0.989175233 1.102968819 -0.047290001 -0.004726766 0.042563235
15 5640 21650 294.975403 154.088242 249.458969 310.58548 185.754669 12200 24.995768 0.954899 0.992401 0.990944 0.94974 0.253264 251.289154 96.176468 214.708679 233.682846 186.950348 8300 24.995768 0.951343 0.994019 0.993439 1.075343 0.286758 1118.113159 449.235291 258.695374 360.049347 168.50296 5300 24.995768 0.892314 0.992714 0.990295 3.105444 0.804131 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 140.887161 155.112686 668.877868 0.012249138 0.014347675 0.018753527 0.85373682 0.653164525 0.765065428 -0.068675988 -0.184977411 -0.116301423
16 5890 21660 283.855255 139.191177 286.939941 264.521942 191.658463 15200 16.981386 0.969751 0.992455 0.99247 1.073088 0.286157 304.057678 63.794117 257.553406 143.278305 189.655014 10400 16.981386 0.964233 0.992828 0.996185 2.122147 0.565906 1133.47998 376.779419 233.411453 322.42392 163.712234 5000 16.981386 0.908594 0.991417 0.991859 3.515496 0.818693 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 144.664078 240.263561 756.700561 0.012577515 0.022223995 0.021215838 0.565943018 0.592836105 1.047519072 -0.247227293 -0.227065355 0.020161939
17 6150 21670 336.09375 114.220589 279.157074 224.139267 186.097076 16000 22.265999 0.952345 0.992416 0.994461 1.499486 0.399863 234.901962 34.485294 200.848022 81.185158 190.492355 10200 22.265999 0.970055 0.994102 0.997627 2.89341 0.771576 782.574341 305.352936 265.543152 274.305634 185.925949 14800 22.265999 0.952582 0.991913 0.991867 2.852928 0.760781 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 221.873161 200.416668 477.221405 0.019290296 0.018538221 0.013379998 1.04056891 1.441726408 1.385517474 0.017270846 0.158882853 0.141612008
18 6390 21650 369.033051 179.088242 270.013153 311.941101 190.157852 12100 24.995768 0.964722 0.992386 0.993149 1.183022 0.315472 261.480377 67.441177 245.948822 195.794235 190.992981 10200 24.995768 0.968721 0.992073 0.996544 1.335486 0.356129 841.518494 360.823517 241.103775 330.17276 185.067963 8100 24.995768 0.963017 0.993378 0.991013 2.548722 0.679659 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 189.944809 194.0392 480.694977 0.016514353 0.017948315 0.013477387 0.920106008 1.225337833 1.331735499 -0.036162134 0.088255843 0.124417976
19 2120 21920 307.658813 117.279411 261.92157 211.348328 190.157852 17000 8.018126 0.966545 0.991997 0.993874 1.455696 0.388185 287.982605 133.75 232.607269 226.782379 183.513474 11500 8.018126 0.952675 0.992851 0.993134 1.269863 0.33863 955.514282 361.676483 250.678894 303.158966 180.010986 7000 8.018126 0.945049 0.993553 0.992378 3.151859 0.805895 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 190.379402 154.232605 593.837799 0.016552137 0.014266269 0.016649606 1.160228895 0.994145883 0.856853236 0.064543677 -0.002549882 -0.067093559
20 2370 21920 303.251617 205.661758 267.195221 401.874756 189.150833 15500 8.018126 0.965063 0.99295 0.98938 0.754592 0.201225 259.111115 56.985294 223.234268 126.919472 189.487106 10800 8.018126 0.969517 0.993362 0.997116 2.041539 0.544411 1169.546509 430.573517 267.120087 351.515961 185.754669 8600 8.018126 0.964283 0.992043 0.990952 3.327151 0.812282 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 97.589859 202.125821 738.972992 0.008484745 0.018696315 0.020718805 0.453819138 0.409519062 0.902383854 -0.343117194 -0.387725878 -0.044608684

Total number of rows: 5184

Table truncated, full table size 2714 Kbytes.




Supplementary data files not provided

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