NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM11941 Query DataSets for GSM11941
Status Public on May 10, 2004
Title RE3_LT2_H2O2_120 min_3D297_1
Sample type RNA
 
Channel 1
Source name LT2 120 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name LT2 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium LT2 Expression after exposure to 2mM H2O2 for 120min
User - PCheng
Date_of_Scan = Wed Aug 20 11:59:25 2003
Sample_target_source3: LT2 Cy5 labeled genomic DNA
 
Submission date Oct 21, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE806 LT2_hydrogen_peroxide_2mM_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2130 2970 13717.73828 204.367645 19498.07227 301.739685 188.476501 28300 18.400808 0.971972 0.501244 0.992271 45.462161 0.57285 1531.884644 601.985291 215.616196 362.581512 155.331558 2600 18.400808 0.889153 0.994316 0.989517 4.224939 0.821611 1416.419189 130.029419 2204.494629 284.812012 191.658463 19800 18.400808 0.971266 0.934669 0.990723 4.973172 0.833348 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13513.37064 929.899353 1286.38977 0.78671131 0.019835239 0.049940571 39.66230538 15.75294994 0.397176861 1.598377954 1.197361893 -0.401016061
2 2390 2970 444.406067 150.911758 287.790833 234.611633 189.655014 16500 13.528972 0.965303 0.991386 0.994469 1.89422 0.505125 1303.875 545.382324 203.687805 326.494141 164.87471 2400 13.528972 0.910932 0.994347 0.990311 3.993563 0.814821 1498.795898 104.014709 1644.591309 185.586639 186.609512 19600 13.528972 0.963699 0.951996 0.994835 8.07599 0.842528 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 293.494309 758.492676 1394.781189 0.017086432 0.016179045 0.054148572 1.0560841 0.315547239 0.298789878 0.023698504 -0.500935615 -0.524634119
3 2640 2980 375.794739 162.691177 399.555359 330.299866 191.159576 19000 4.268329 0.967453 0.991074 0.994156 1.137738 0.303397 1307.607178 543.352966 243.843506 377.12384 162.932648 2800 4.268329 0.895445 0.992958 0.98867 3.467315 0.817095 470.740265 80.191177 623.713806 163.328003 187.460449 15400 4.268329 0.966381 0.979164 0.995583 2.882177 0.768581 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 213.103562 764.254212 390.549088 0.012406304 0.016301942 0.015162002 0.761032282 0.818249716 1.075183978 -0.118596921 -0.087114137 0.031482784
4 2890 2980 670.721313 189.691177 1087.549683 259.06839 190.826248 12200 4.268329 0.958589 0.990273 0.992683 2.588974 0.690393 2296.518555 548.352966 3999.220703 379.234894 164.29451 2700 4.268329 0.895056 0.839485 0.989532 6.055663 0.825007 894.617371 86.294121 929.724792 156.61351 186.779999 19600 4.268329 0.959434 0.970589 0.995598 5.712262 0.842218 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 481.030136 1748.165589 808.32325 0.028004253 0.037289285 0.031380943 0.750999986 0.892396785 1.188278031 -0.124360071 -0.049442003 0.074918068
5 3150 2990 369.541168 175.176468 297.434998 254.828186 188.476501 17000 9.891791 0.961726 0.991379 0.993294 1.450158 0.386709 1274.868408 560.955872 194.064789 413.192902 171.49881 3800 9.891791 0.914382 0.994057 0.988892 3.085407 0.803359 807.085693 70.308823 1153.39624 152.095444 185.067963 14000 9.891791 0.966487 0.963707 0.995338 5.306442 0.845331 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 194.3647 713.912536 736.77687 0.011315379 0.015228127 0.02860335 0.743057797 0.395596273 0.53238964 -0.128977405 -0.402747809 -0.273770404
6 3400 3000 384.829407 168.617645 264.769165 312.055542 187.290573 17000 18.249195 0.966231 0.992508 0.992493 1.233208 0.328855 1235.710571 466 211.821182 287.458954 156.556274 3800 18.249195 0.897683 0.993988 0.991669 4.298737 0.841238 482.726746 95.676468 424.188599 186.278595 186.268051 17200 18.249195 0.961686 0.987434 0.99424 2.591424 0.691046 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 216.211762 769.710571 387.050278 0.012587255 0.016418329 0.01502617 0.766658713 0.837688811 1.092648914 -0.115397924 -0.076917285 0.038480639
7 3650 2990 342.297455 162.735291 259.540039 246.45369 191.326019 15800 9.891791 0.973181 0.992371 0.993584 1.388892 0.370371 1166.524536 482.882355 242.747986 388.256104 176.799423 6100 9.891791 0.919836 0.992867 0.989677 3.004523 0.800181 633.742859 66 721.813721 139.740906 187.799744 14000 9.891791 0.95644 0.978699 0.995796 4.535128 0.840364 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 179.562164 683.642181 567.742859 0.010453616 0.014582445 0.022041066 0.716863042 0.47427904 0.66160342 -0.144563809 -0.323966068 -0.179402258
8 3890 2980 357.978821 163.602936 285.667328 275.730743 190.992981 18900 4.268329 0.965468 0.991356 0.991219 1.298291 0.346211 1281.029419 536.294128 165.031769 363.262909 158.977386 3400 4.268329 0.887155 0.995323 0.988083 3.526453 0.819052 2405.881348 114.426468 2270.30542 184.972397 186.268051 19400 4.268329 0.950186 0.92701 0.994446 13.006705 0.843149 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 194.375885 744.735291 2291.45488 0.01131603 0.015885593 0.088959479 0.712345459 0.127204319 0.178571109 -0.14730934 -0.895498144 -0.748188805
9 4140 2970 632.865662 229.294113 267.210724 296.895721 178.055252 6700 13.528972 0.926166 0.993004 0.990532 2.131609 0.568429 1292.703735 480.691162 330.916077 290.527527 166.412033 2700 13.528972 0.888611 0.986809 0.991425 4.449505 0.825007 603.681824 78.970589 857.520569 200.730225 190.492355 17600 13.528972 0.97116 0.975685 0.992813 3.007429 0.800297 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 403.571549 812.012573 524.711235 0.023494827 0.017320652 0.020370481 1.356463147 1.153376134 0.850281953 0.132407999 0.061970961 -0.070437038
10 4390 2980 512.847473 196.147064 253.984711 254.264297 188.813965 11800 4.268329 0.967869 0.99276 0.992073 2.016986 0.537863 1456.590942 652.147034 133.016876 417.14978 147.338852 2200 4.268329 0.850214 0.995834 0.989876 3.49177 0.80803 975.795349 115.808823 1281.605225 210.195099 190.492355 21500 4.268329 0.964636 0.961372 0.99469 4.642332 0.835468 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 316.700409 804.443908 859.986526 0.018437428 0.017159209 0.033386629 1.074491708 0.552239872 0.513954522 0.031203068 -0.25787224 -0.289075309
11 4640 2970 508.708038 185.544113 285.945679 237.739822 188.307541 13700 13.528972 0.95945 0.991554 0.994308 2.139768 0.570605 1460.612915 592.294128 246.241974 452.106934 149.057159 3100 13.528972 0.88082 0.993004 0.986893 3.23068 0.80882 645.719238 108.720589 589.296204 202.343048 192.321655 20300 13.528972 0.968449 0.984695 0.995338 3.19121 0.807367 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 323.163925 868.318787 536.998649 0.018813716 0.018521693 0.020847506 1.015766505 0.902444419 0.888436875 0.006793888 -0.044579537 -0.051373424
12 4890 2970 668.011353 260.602936 318.859802 294.654785 182.992371 8800 13.528972 0.94356 0.989014 0.992584 2.267098 0.60456 1401.800049 557.147034 208.184967 349.202728 166.029037 5000 13.528972 0.873879 0.99295 0.987457 4.014287 0.833729 560.769653 114.970589 467.301941 203.506714 185.239883 19100 13.528972 0.952452 0.986328 0.994591 2.755534 0.734809 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 407.408417 844.653015 445.799064 0.023718199 0.01801689 0.017306932 1.316442431 1.370445052 1.041021635 0.119401872 0.136861627 0.017459755
13 5140 2980 566.5578 183.691177 291.279846 239.801422 187.290573 14700 4.268329 0.963345 0.991692 0.994423 2.362612 0.63003 2094.09668 667.088257 545.944458 357.434082 142.952789 9300 4.268329 0.88559 0.985252 0.989487 5.858693 0.872752 571.928223 89.647057 537.600464 190.387878 189.655014 19500 4.268329 0.954812 0.98381 0.994659 3.004016 0.800161 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 382.866623 1427.008423 482.281166 0.022289443 0.030438835 0.01872325 0.732269899 1.190468717 1.625723957 -0.135328818 0.075717988 0.211046806
14 5390 2990 462.754852 173.352936 292.856598 263.761932 188.138428 15500 7.307817 0.956976 0.991463 0.992096 1.754441 0.467851 1462.76001 695.411743 140.988266 422.528137 169.256897 2500 7.307817 0.909361 0.996124 0.986855 3.461923 0.816914 364.276306 87.029411 324.672485 185.007706 188.645309 15200 7.307817 0.964154 0.990425 0.994644 1.968979 0.525061 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 289.401916 767.348267 277.246895 0.016848184 0.016367939 0.010763354 1.029340585 1.565328503 1.520709982 0.012559097 0.194605493 0.182046397
15 5630 2970 587.752502 256.911774 269.736481 306.031799 188.476501 10100 18.400808 0.957436 0.992592 0.99176 1.92056 0.512149 1403.714233 642.955872 329.713562 357.329956 165.452881 2800 18.400808 0.882665 0.987274 0.988861 3.928342 0.828402 915.356384 46.35294 1226.658203 95.218643 190.157852 18800 18.400808 0.965567 0.973381 0.997513 9.613205 0.836077 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 330.840728 760.758361 869.003444 0.019260638 0.016227373 0.033736686 1.186922724 0.570910792 0.48100081 0.074422445 -0.243431748 -0.317854192
16 5890 2970 374.109833 174.485291 286.572632 280.015472 192.321655 17300 13.528972 0.972616 0.99128 0.992828 1.336033 0.356275 1508.382324 588.367676 278.692719 347.051788 142.283218 3400 13.528972 0.851047 0.989807 0.990616 4.346274 0.842427 420.687103 94.941177 393.179077 190.165192 191.658463 16300 13.528972 0.974413 0.987457 0.995171 2.212219 0.589925 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 199.624542 920.014648 325.745926 0.011621592 0.019624393 0.012646196 0.592201362 0.918979285 1.551802047 -0.227530598 -0.036694278 0.19083632
17 6130 2980 412.771423 219.220581 369.200531 349.048981 192.817535 17500 13.182385 0.970115 0.989792 0.989403 1.18256 0.315349 1269.370361 591.617676 169.786331 399.374146 147.554733 2700 13.182385 0.783341 0.993683 0.988243 3.178399 0.80689 712.029114 89.382355 688.80481 163.874084 190.157852 20600 13.182385 0.967369 0.982216 0.995453 4.344977 0.836077 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 193.550842 677.752685 622.646759 0.011267998 0.014456819 0.02417256 0.779424457 0.466148311 0.598067339 -0.108225971 -0.331475885 -0.223249914
18 6380 2960 430.541351 184.088242 262.519135 279.689514 193.476746 13300 26.521769 0.971659 0.993126 0.992752 1.539355 0.410495 1205.676514 470.808838 243.721863 318.525299 171.684311 3400 26.521769 0.899971 0.993263 0.990463 3.785183 0.827145 324.814514 91.602943 258.378662 156.192017 185.239883 12400 26.521769 0.963933 0.992783 0.99575 2.079585 0.554556 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 246.453109 734.867676 233.211571 0.014347823 0.015675112 0.009053803 0.915325091 1.584728939 1.731329071 -0.038424633 0.199954989 0.238379621
19 2130 3220 584.734192 258.220581 276.045319 353.918945 186.268051 7900 18.400808 0.952886 0.990715 0.989769 1.65217 0.440579 1177.06665 532.882324 277.009705 403.811005 168.880341 6000 18.400808 0.923538 0.992363 0.989662 2.914895 0.777305 365.884949 62.044117 447.330719 185.417755 185.583237 11300 18.400808 0.949894 0.985474 0.993698 1.9733 0.526213 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 326.513611 644.184326 303.840832 0.019008725 0.013740788 0.011795791 1.383379537 1.611483769 1.164889118 0.140941347 0.207225936 0.066284588
20 2390 3230 458.371887 162.720581 266.059723 266.042694 187.799744 12100 4.268329 0.96028 0.992035 0.994804 1.722926 0.459447 1381.266724 575.882324 177.33844 374.115021 148.843445 1500 4.268329 0.813328 0.995354 0.989494 3.692091 0.784263 442.205139 58.5 592.375427 128.583496 190.157852 15600 4.268329 0.969643 0.984955 0.996902 3.439051 0.816144 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 295.651306 805.3844 383.705139 0.017212007 0.01717927 0.014896304 1.00190559 1.155454819 1.153257184 0.0008268 0.062752968 0.061926169

Total number of rows: 5184

Table truncated, full table size 2712 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap