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Sample GSM11943 Query DataSets for GSM11943
Status Public on May 10, 2004
Title RE3_LT2_H2O2_120 min_3D297_3
Sample type RNA
 
Channel 1
Source name LT2 120 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name LT2 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium LT2 Expression after exposure to 2mM H2O2 for 120min
User - PCheng
Date_of_Scan = Wed Aug 20 11:59:25 2003
Sample_target_source3: LT2 Cy5 labeled genomic DNA
 
Submission date Oct 21, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE806 LT2_hydrogen_peroxide_2mM_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2020 40490 13175.28711 283.25 20327.13672 404.774292 191.326019 27500 8.821141 0.972812 0.501183 0.989616 32.549713 0.57278 2053.625 834.264709 352.201447 394.099213 131.832184 1600 8.821141 0.814729 0.991226 0.987213 5.210934 0.787658 1643.730713 143 2679.838867 281.042847 188.476501 18200 8.821141 0.964715 0.913605 0.991783 5.848684 0.839134 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 12892.03711 1219.360291 1500.730713 0.893692257 0.020499069 0.048565948 43.59672431 18.40162277 0.42208728 1.639453859 1.264856124 -0.374597736
2 2280 40480 638.514282 246.897064 270.971588 297.539124 187.290573 10500 8.204838 0.954542 0.992264 0.992889 2.145984 0.572262 2078.300049 885.058838 126.333817 432.2789 102.179092 1000 8.204838 0.733778 0.996887 0.986259 4.807776 0.767287 1193.557739 80.661766 1217.894165 142.738525 187.630173 19900 8.204838 0.964134 0.968315 0.996284 8.361847 0.840672 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 391.617218 1193.241211 1112.895973 0.027147399 0.020059972 0.036015021 1.353311879 0.753779903 0.556989054 0.131397894 -0.122755446 -0.25415334
3 2530 40480 530.076355 254.647064 330.526154 344.929016 188.307541 13100 8.204838 0.972972 0.989098 0.991501 1.536769 0.409805 2129.166748 919.941162 154.162796 452.271515 102.490135 600 8.204838 0.542437 0.996956 0.987183 4.707718 0.619928 326.520264 138.838242 279.35257 315.568848 188.982483 14800 8.204838 0.967231 0.990997 0.993774 1.034704 0.275921 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 1 0 1 275.429291 1209.225586 187.682022 0.019093106 0.020328691 0.006073678 0.939219621 3.143582032 3.347014865 -0.027232843 0.497424798 0.524657641
4 2790 40510 486.371216 218.029419 272.499969 304.995605 188.476501 13200 24.6964 0.959749 0.991539 0.990776 1.594683 0.425249 1826.090942 790.852966 91.927643 502.570343 110.269852 1100 24.6964 0.737711 0.997643 0.98056 3.633503 0.770682 902.704651 101.5 793.561951 173.741577 189.487106 19300 24.6964 0.965209 0.976654 0.995522 5.195674 0.837296 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 268.341797 1035.237976 801.204651 0.018601791 0.017403728 0.025928212 1.068839485 0.717434421 0.671227468 0.028912489 -0.144217791 -0.17313028
5 3040 40510 381.994019 178.485291 255.57692 267.754211 188.138428 16700 24.6964 0.960474 0.992104 0.993347 1.426659 0.380442 1707.400024 765.602966 144.669479 421.790588 133.27301 1500 24.6964 0.780115 0.996521 0.985008 4.04798 0.784263 364.510498 96.352943 349.230103 174.034637 192.321655 14300 24.6964 0.967689 0.989754 0.995087 2.094471 0.558526 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 1 203.508728 941.797058 268.157555 0.014107481 0.015832862 0.00867799 0.891025372 1.625662358 1.824484925 -0.050109929 0.21103035 0.261140279
6 3290 40490 578.155334 215.117645 324.655304 300.760101 187.290573 10300 11.548557 0.956556 0.989731 0.989693 1.922314 0.512617 2053.142822 718.294128 446.637665 326.360291 125.143318 1400 11.548557 0.802053 0.987091 0.98896 6.291031 0.780868 410.242767 90.205879 434.048309 176.451294 189.822784 17300 11.548557 0.97322 0.989792 0.995689 2.324963 0.61999 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 1 363.037689 1334.848694 320.036888 0.02516623 0.022440583 0.010356885 1.121460634 2.429903477 2.166730962 0.049784033 0.385589023 0.335804989
7 3540 40490 637.108521 213.897064 1034.95874 288.593567 187.969162 12900 11.548557 0.95285 0.986839 0.992409 2.207632 0.588702 1790.166626 720.397034 711.249573 394.21225 170.754776 4200 11.548557 0.906923 0.968498 0.988495 4.541124 0.847121 523.89679 166.279419 606.072449 336.132477 187.460449 15500 11.548557 0.957038 0.981239 0.990898 1.558602 0.415627 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 423.211457 1069.769592 357.617371 0.029337551 0.01798425 0.011573047 1.631291328 2.534989456 1.553977155 0.212531527 0.403976157 0.19144463
8 3780 40500 533.210083 207.397064 309.537994 263.343536 187.630173 11900 11.994263 0.961407 0.990746 0.992714 2.02477 0.539939 1831.928589 698.411743 202.169952 375.391693 146.254669 1400 11.994263 0.880612 0.995522 0.988937 4.880046 0.780868 1353.146606 94.279411 1306.760742 199.901535 189.319046 19100 11.994263 0.972173 0.962509 0.994087 6.769066 0.837602 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 325.813019 1133.516846 1258.867195 0.022585769 0.019055926 0.040738874 1.185235949 0.554403374 0.467757812 0.073804815 -0.256174135 -0.32997895
9 4030 40490 416.026672 164.602936 310.517883 222.030121 191.658463 15000 2.364499 0.976832 0.989853 0.993889 1.87374 0.499664 1853.166626 790.970581 202.454361 391.137085 129.148911 600 2.364499 0.705173 0.996925 0.985901 4.737895 0.753705 288.037598 98.823532 242.64241 200.730148 187.120529 13300 2.364499 0.959707 0.992447 0.99427 1.434949 0.382653 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 1 251.423736 1062.196045 189.214066 0.01742901 0.017856929 0.006123257 0.976036268 2.84636247 2.916246622 -0.010534044 0.454290204 0.464824249
10 4280 40490 410.200012 150.602936 319.519867 225.466751 191.326019 15000 2.364499 0.970907 0.991043 0.994896 1.819337 0.485157 1712.477295 632.852966 353.270386 378.120667 164.681534 4400 2.364499 0.909654 0.987534 0.988998 4.528917 0.846835 994.882996 86.544121 1441.447876 192.733627 181.77066 18800 2.364499 0.956083 0.952072 0.993256 5.161959 0.851326 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 259.597076 1079.624329 908.338875 0.017995596 0.018149921 0.029395239 0.991497204 0.612194244 0.617444247 -0.003708506 -0.213110758 -0.209402252
11 4530 40490 514.142883 178.941177 314.767761 263.44696 191.159576 14700 2.364499 0.969121 0.990211 0.99234 1.951599 0.520426 1632.484863 634.588257 271.163696 388.116058 157.569595 3300 2.364499 0.905307 0.992561 0.987923 4.206177 0.83887 708.172424 108.647057 638.64801 209.532089 189.822784 20300 2.364499 0.964073 0.980118 0.993286 3.37978 0.814119 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 335.201706 997.896606 599.525367 0.023236605 0.01677597 0.019401561 1.385112457 1.197666781 0.86467115 0.141485035 0.078336004 -0.063149031
12 4780 40500 613.792053 218.470581 294.764221 241.273209 179.124664 10100 11.994263 0.937779 0.990982 0.994041 2.543971 0.678392 1599.913086 760.867676 126.844185 564.809326 152.435654 2300 11.994263 0.82234 0.996063 0.984566 2.832661 0.755376 532.748718 139.573532 497.929901 255.603836 185.239883 19500 11.994263 0.954547 0.985458 0.992325 2.084275 0.555807 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 395.321472 839.04541 393.175186 0.027404183 0.01410547 0.012723752 1.942805383 2.153781539 1.108593562 0.288429298 0.33320165 0.044772352
13 5030 40490 602.894287 243.397064 303.244781 310.6716 188.138428 12300 2.364499 0.945912 0.991524 0.991341 1.940616 0.517498 2337.8396 574.235291 901.238281 400.443146 166.984879 13100 2.364499 0.903863 0.975311 0.98793 5.838131 0.872419 750.77832 123.441177 783.808899 198.310349 190.157852 20300 2.364499 0.96987 0.979012 0.995087 3.785876 0.827165 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 359.497223 1763.604309 627.337143 0.0249208 0.029648535 0.020301592 0.840540703 1.227529352 1.460404413 -0.075441251 0.089031886 0.164473137
14 5280 40510 656.24707 331.808838 274.638214 410.799927 186.779999 8500 21.957546 0.967437 0.990181 0.990295 1.597486 0.425996 1914.5 797.617676 62.932503 372.373657 0 200 21.957546 0 0.999321 0.988327 5.141341 0 375.521362 176.529419 274.047058 279.147705 188.645309 11700 21.957546 0.963106 0.992615 0.992455 1.345243 0.358731 1 1 1 1 1 0 0 0 0 1 1 1 1 1 1 1 1 0 1 324.438232 1116.882324 198.991943 0.022490467 0.018776278 0.006439685 1.197812852 3.492479622 2.915713934 0.078388969 0.543133881 0.464744912
15 5520 40490 435.047913 228.411758 294.955139 335.262604 191.326019 16700 8.821141 0.967349 0.991386 0.99012 1.297633 0.346036 1927 763.514709 276.953522 429.042908 122.3134 900 8.821141 0.712265 0.993126 0.987732 4.491392 0.763891 693.04303 101.955879 716.503662 279.348145 189.990387 18600 8.821141 0.964046 0.978806 0.993271 2.480929 0.661581 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 1 206.636155 1163.485291 591.087151 0.014324279 0.019559736 0.019128487 0.732334974 0.748845356 1.022544849 -0.135290225 -0.125607859 0.009682366
16 5780 40500 567.660706 221.985291 293.025543 284.550354 186.097076 11200 11.994263 0.953403 0.990715 0.992264 1.994939 0.531984 1554.681763 629.955872 239.171417 352.334015 156.149109 4400 11.994263 0.905268 0.991249 0.989265 4.412522 0.844055 470.529419 100.558823 452.041504 204.686539 189.822784 18700 11.994263 0.966558 0.987137 0.992676 2.29878 0.613008 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 345.675415 924.725891 369.970596 0.023962655 0.015545873 0.011972816 1.541415904 2.001421823 1.29843076 0.187919836 0.301338631 0.113418795
17 6040 40490 605.387085 192.308823 275.84082 231.833786 187.460449 9300 11.548557 0.961065 0.989502 0.994026 2.611298 0.696346 1471.714233 623.352966 169.17244 415.308807 160.769302 2100 11.548557 0.886911 0.995163 0.988205 3.543662 0.804635 760.52002 127.941177 663.706726 236.468857 186.950348 20000 11.548557 0.962332 0.980934 0.993271 3.216153 0.808288 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 413.078262 848.361267 632.578843 0.028635106 0.014262082 0.020471222 2.007778823 1.398798075 0.696689326 0.302715869 0.145755026 -0.156960843
18 6290 40480 355.035492 142.632355 329.120544 217.793274 190.157852 16900 13.967737 0.968265 0.990623 0.9944 1.630149 0.434706 1650.733276 647.294128 361.494598 380.682465 109.400429 1500 13.967737 0.708413 0.989082 0.989342 4.336247 0.784263 398.350006 207.558823 365.475922 330.913849 193.147415 16000 13.967737 0.972937 0.988037 0.99025 1.203788 0.32101 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 1 212.403137 1003.439148 190.791183 0.014724053 0.016869147 0.006174295 0.872839207 2.384734161 2.732157471 -0.059065754 0.377439973 0.436505727
19 2010 40740 567.78833 191.941177 300.497528 265.866852 190.157852 13700 18.709202 0.962501 0.991783 0.992455 2.135612 0.569496 2032.944458 855.632324 414.624908 404.424561 167.555771 1800 18.709202 0.897436 0.987213 0.987144 5.026758 0.794449 292.282257 116.514709 255.995255 280.054077 188.138428 12400 18.709202 0.958195 0.992455 0.992752 1.043664 0.27831 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 1 375.847153 1177.312134 175.767548 0.026054198 0.019792183 0.005688107 1.316388274 4.58046868 3.479572685 0.119384005 0.660909918 0.541525913
20 2270 40740 766.421082 276.823517 298.955078 325.636261 182.469788 7600 8.821141 0.952671 0.989784 0.992867 2.353611 0.62763 2116.5 889.455872 79.903069 388.385071 0 200 8.821141 0 0.999138 0.988182 5.449489 0 300.26532 72.25 278.266449 130.920212 188.645309 14700 8.821141 0.964251 0.992027 0.996681 2.293499 0.6116 1 1 1 1 1 0 0 0 0 1 1 1 1 1 1 1 1 0 1 489.597565 1227.044128 228.01532 0.03393952 0.020628244 0.007378926 1.645293674 4.599520607 2.79556208 0.216243428 0.662712569 0.446469141

Total number of rows: 5184

Table truncated, full table size 2699 Kbytes.




Supplementary data files not provided

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