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Sample GSM12047 Query DataSets for GSM12047
Status Public on May 10, 2004
Title RE3_SL1344_HS_37C_5 min_3D139_2
Sample type RNA
 
Channel 1
Source name SL1344 5 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name SL1344 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium SL1344 Expression after heatshock with 37C
User - PCheng
Date_of_Scan = Fri Jul 18 11:45:46 2003
Sample_target_source3: SL1344 genomic DNA
 
Submission date Oct 22, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE807 SL1344_heat_shock_37C_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2260 21690 9615.012695 410.029419 17638.43359 464.774048 186.097076 23000 52.572582 0.963323 0.504677 0.985962 20.687499 0.576774 1130.78125 189.735291 1380.385132 446.786743 188.138428 19200 52.572582 0.956622 0.952972 0.989609 2.530919 0.674912 3503.628174 762.220581 2648.707764 525.518677 177.697342 12100 52.572582 0.929809 0.925117 0.984291 6.666991 0.858732 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 9204.983276 941.045959 2741.407593 0.149108864 0.037523982 0.020047244 3.973695109 7.437873353 1.871777564 0.599194542 0.871448779 0.272254237
2 2510 21700 1567.421021 410.867645 821.481445 490.272095 186.097076 17100 46.517487 0.958587 0.978088 0.985916 3.197043 0.807583 835.860352 312.264709 752.4646 497.875122 189.487106 17900 46.517487 0.968152 0.976471 0.985214 1.678855 0.447695 6022.077148 887.014709 2767.23999 518.593201 153.268631 13000 46.517487 0.906696 0.904877 0.981926 11.612333 0.903148 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1156.553376 523.595643 5135.062439 0.018734674 0.020878251 0.037551458 0.897329672 0.498906703 0.555990422 -0.047047971 -0.301980661 -0.25493269
3 2770 21720 1191.397461 503.044128 451.360321 627.148804 186.097076 7800 49.481781 0.945991 0.987221 0.980858 1.899705 0.506588 763.361328 371.985291 515.663513 624.195618 188.813965 11900 49.481781 0.965717 0.984749 0.982338 1.222952 0.326121 2766.853516 847.573547 1016.343872 582.517517 156.75946 11600 49.481781 0.914112 0.969292 0.982048 4.74982 0.851848 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 688.353333 391.376037 1919.279969 0.011150437 0.015606026 0.014035226 0.714495603 0.794460804 1.111918396 -0.14600044 -0.099927524 0.046072915
4 3010 21710 1697.127686 550.617676 652.239136 495.316101 178.41243 14100 41.998528 0.950806 0.9813 0.988716 3.426353 0.815714 1019.321899 446.117645 654.059326 628.328674 181.068848 14600 41.998528 0.938973 0.976685 0.983727 1.622275 0.432607 6518.830078 746.955872 3226.078857 520.698364 170.941086 15300 41.998528 0.915691 0.914391 0.985123 12.519398 0.871016 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1146.51001 573.204254 5771.874206 0.018571984 0.022856382 0.042208307 0.812551354 0.440007805 0.541513842 -0.090149182 -0.35653962 -0.266390438
5 3250 21720 842.837341 391.970581 398.980286 465.384186 191.326019 16600 29.653097 0.970328 0.987625 0.98658 1.811057 0.482949 636.075867 362.176483 614.349731 583.801453 190.659378 14500 29.653097 0.966911 0.978394 0.982033 1.089541 0.290544 3658.02417 807.176453 1783.703125 523.919128 161.164795 8300 29.653097 0.882213 0.957359 0.98246 6.98204 0.888667 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 450.86676 273.899384 2850.847717 0.00730346 0.010921672 0.020847553 0.668712644 0.35032698 0.523882692 -0.174760465 -0.455526414 -0.280765949
6 3510 21710 1454.738037 558.25 1365.704834 991.326599 184.033096 8400 41.998528 0.958721 0.978058 0.975876 1.467466 0.391324 605.884644 219.073532 576.315247 450.054291 190.492355 15600 41.998528 0.970081 0.98201 0.986015 1.346248 0.358999 2249.963135 666.397034 900.278442 558.887085 184.378693 16300 41.998528 0.951993 0.975113 0.984688 4.025792 0.834047 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 896.488037 386.811112 1583.566101 0.014521951 0.015424 0.011580232 0.941516486 1.254029315 1.331924967 -0.026172071 0.098307689 0.12447976
7 3770 21710 1471.763184 509.676483 637.90387 563.495911 174.989761 7600 51.463062 0.919933 0.984085 0.985878 2.611844 0.696492 585.09259 321.808838 515.751892 554.824158 192.817535 16200 51.463062 0.97446 0.986336 0.985855 1.054555 0.281215 3186.506104 740.632324 1501.627075 509.308716 156.352814 8300 51.463062 0.920594 0.958824 0.986954 6.256532 0.878884 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 962.086701 263.283752 2445.87378 0.015584564 0.010498377 0.017886078 1.48447376 0.87132376 0.586958007 0.171572525 -0.059820443 -0.231392968
8 4010 21730 1530.677734 535.279419 635.206116 550.310791 183.339935 12100 39.545879 0.941333 0.981522 0.984787 2.781479 0.741728 633.25885 225.544113 609.671875 409.708466 191.658463 17000 39.545879 0.972657 0.983498 0.989189 1.545633 0.412169 7464.89209 754.088257 3742.954834 527.723816 168.880341 14800 39.545879 0.915968 0.900711 0.98539 14.145452 0.874763 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 995.398315 407.714737 6710.803833 0.01612417 0.016257527 0.04907447 0.991797168 0.328565337 0.331282794 -0.003577136 -0.483378256 -0.47980112
9 4260 21730 1567.8125 599.088257 543.917114 577.266479 160.571182 4800 39.545879 0.906641 0.985962 0.984253 2.715925 0.724247 523.458618 330.279419 444.2995 546.118042 189.150833 15700 39.545879 0.964169 0.986717 0.986855 0.958508 0.255602 3905.23877 702.411743 2201.711426 435.046753 167.1754 13400 39.545879 0.921108 0.947937 0.987198 8.976596 0.877863 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 968.724243 193.179199 3202.827027 0.015692084 0.007702974 0.023421492 2.037146113 0.669986529 0.328884867 0.30902218 -0.173933929 -0.482956109
10 4530 21730 1311.3125 411.632355 561.049805 467.109711 183.166229 9600 59.439186 0.948285 0.982605 0.986855 2.80729 0.748611 633.331177 246.529419 553.922058 498.133728 189.990387 15400 59.439186 0.966912 0.982056 0.98497 1.271408 0.339042 2776.625 736.955872 969.744019 569.809021 157.771469 9600 59.439186 0.875521 0.969109 0.982231 4.872905 0.854501 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 899.680145 386.801758 2039.669128 0.014573659 0.015423627 0.014915602 0.944891776 0.977074773 1.034059982 -0.024617931 -0.0100722 0.014545731
11 4780 21730 2006.050781 465.691162 1060.338135 473.110321 170.568253 13800 59.439186 0.931665 0.965096 0.985664 4.240133 0.839747 1767.375 187.073532 1699.040649 289.724121 193.805511 22400 59.439186 0.972875 0.957756 0.992592 6.1002 0.829445 3695.532959 751.382324 1295.634399 480.513916 168.124725 13700 59.439186 0.911926 0.961464 0.98764 7.690793 0.876137 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1540.359619 1580.301468 2944.150635 0.02495184 0.063014142 0.021529855 0.39597207 1.158941421 2.926826184 -0.402335446 0.064061485 0.466396932
12 5010 21740 1935.944458 480.102936 1033.372559 487.622345 179.479706 12600 41.998528 0.935378 0.971428 0.981941 3.970172 0.832501 694.854553 191.735291 688.757202 327.254059 188.982483 16500 41.998528 0.961376 0.979645 0.991081 2.123288 0.56621 2529.851807 705.867676 1069.9198 452.133453 167.745636 10800 41.998528 0.897282 0.966415 0.986092 5.595365 0.868341 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1455.841522 503.119262 1823.984131 0.023582756 0.02006176 0.013338351 1.175507838 1.768041411 1.504066034 0.070225529 0.247492433 0.177266904
13 5270 21750 5898.3125 341.911774 6129.113281 458.656342 192.65239 25600 55.212742 0.972165 0.818138 0.988899 12.859982 0.831541 2094.779297 261.073517 1866.005127 498.360138 189.655014 23100 55.212742 0.967537 0.95079 0.987877 4.203344 0.836991 2832.065186 723.294128 1101.866089 533.638306 162.149323 13800 55.212742 0.877083 0.965912 0.984116 5.307088 0.863147 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5556.400726 1833.70578 2108.771058 0.09000653 0.073118579 0.015420928 1.230966624 5.836648152 4.741516171 0.090246278 0.766163514 0.675917236
14 5530 21760 1101.377319 412.573517 455.80069 511.960297 185.239883 10600 68.796928 0.954784 0.9879 0.985695 2.151294 0.573678 628.013611 283.514709 535.812378 414.819824 192.65239 14700 68.796928 0.967451 0.983307 0.988411 1.513943 0.403718 3414.255127 687.720581 1603.143433 403.302032 157.165054 9800 68.796928 0.842438 0.959778 0.988907 8.465752 0.894959 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 688.803802 344.498902 2726.534546 0.011157734 0.013736811 0.019938481 0.812250647 0.559608004 0.688959752 -0.090309934 -0.252116082 -0.161806148
15 5770 21750 1116.874023 517.235291 549.743469 537.357971 181.42009 12700 55.212742 0.944791 0.981758 0.986305 2.078454 0.554254 660.952026 315.117645 639.715515 574.65033 187.969162 14600 55.212742 0.963643 0.979904 0.985085 1.150181 0.306715 5887.558594 721.455872 2701.359619 498.867065 155.945114 13600 55.212742 0.942503 0.930077 0.983574 11.801859 0.898282 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 599.638732 345.834381 5166.102722 0.009713375 0.013790063 0.037778448 0.704374918 0.257114179 0.365024608 -0.152196117 -0.589873973 -0.437677856
16 6010 21750 2733.215576 505.558838 2424.406738 532.180664 190.32518 16700 46.517487 0.960793 0.926186 0.986687 5.135879 0.835772 936.483154 327.75 839.275879 519.498291 188.307541 17800 46.517487 0.962439 0.976898 0.984451 1.802668 0.480712 2589.1521 680.764709 909.710693 499.578705 152.017441 9200 46.517487 0.863675 0.973763 0.987793 5.182671 0.860776 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2227.656738 608.733154 1908.387391 0.036085168 0.024273089 0.013955571 1.48663272 2.585717764 1.739311754 0.172203687 0.412581119 0.240377432
17 6260 21750 1517.33606 474.514709 639.068604 537.279236 179.124664 12200 46.517487 0.957204 0.981331 0.985519 2.824111 0.753096 785.567444 278.75 608.609436 488.236755 188.307541 17800 46.517487 0.956314 0.982773 0.985245 1.608989 0.429064 3552.948242 831.220581 1290.076782 549.036621 135.874863 11600 46.517487 0.870116 0.96064 0.985405 6.471241 0.881954 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1042.821351 506.817444 2721.727661 0.016892362 0.020209224 0.01990333 0.835873838 0.848720386 1.015369005 -0.077859268 -0.071235366 0.006623902
18 6510 21760 1194.152832 383.794128 519.698975 416.018677 179.834061 7200 52.572582 0.932985 0.984695 0.987808 2.870431 0.765448 564.148926 241.338242 476.046631 405.916077 188.982483 14100 52.572582 0.96921 0.983536 0.987991 1.389817 0.370618 3250.159912 780.073547 1473.486938 474.820709 153.268631 10000 52.572582 0.897589 0.958626 0.986923 6.845026 0.886942 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 810.358704 322.810684 2470.086365 0.013126766 0.012871999 0.018063138 1.019792405 0.726715711 0.712611417 0.008511773 -0.13863545 -0.147147224
19 2250 21940 1075.266724 489.411774 438.217621 550.400635 181.77066 9000 45.599411 0.944451 0.985306 0.987129 1.953607 0.520962 655.435608 219.573532 565.786621 427.996155 193.476746 16300 45.599411 0.974307 0.983932 0.98481 1.531405 0.408375 2252.980713 773.926453 836.615295 552.801208 171.869614 5200 45.599411 0.896159 0.980759 0.983673 4.075571 0.835406 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 585.85495 435.862076 1479.05426 0.009490095 0.017379896 0.010815963 0.546038661 0.877415665 1.606874619 -0.262776607 -0.056794616 0.205981991
20 2510 21950 1393.585693 481.735291 452.551331 443.974335 186.097076 7000 46.517487 0.968724 0.986588 0.989738 3.138888 0.805405 611.634644 247.382355 519.25769 415.771729 184.378693 15600 46.517487 0.959654 0.987427 0.989105 1.471083 0.392289 3772.296631 853.558838 1252.130859 521.415955 162.541458 11800 46.517487 0.892052 0.962448 0.985466 7.234717 0.886288 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 911.850402 364.252289 2918.737793 0.014770801 0.014524473 0.021344017 1.016959544 0.692034744 0.680493878 0.007303676 -0.159872101 -0.167175777

Total number of rows: 5184

Table truncated, full table size 2744 Kbytes.




Supplementary data files not provided

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