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Sample GSM12050 Query DataSets for GSM12050
Status Public on May 10, 2004
Title RE3_SL1344_HS_37C_10 min_3D140_2
Sample type RNA
 
Channel 1
Source name SL1344 10 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name SL1344 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium SL1344 Expression after heatshock with 37C
User - PCheng
Date_of_Scan = Fri Jul 18 12:29:33 2003
Sample_target_source3: SL1344 genomic DNA
 
Submission date Oct 22, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE807 SL1344_heat_shock_37C_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2020 21730 17394.24219 1181.102905 21931.91211 917.694153 169.256897 18200 6.493846 0.941672 0.517708 0.974472 18.954291 0.591666 1251.877808 313.323517 1675.202515 539.006714 188.982483 18000 6.493846 0.963747 0.946754 0.98568 2.322564 0.61935 4392.194336 893.323547 2613.97168 550.161987 167.555771 7200 6.493846 0.883681 0.937096 0.98394 7.983457 0.877171 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 16213.13928 938.554291 3498.870789 0.138388158 0.029701185 0.02766022 4.659348055 5.00314745 1.073787017 0.668325154 0.699243302 0.030918149
2 2270 21730 3043.463623 930.705872 1085.604004 879.371155 175.353195 11000 6.493846 0.924655 0.973022 0.979424 3.460955 0.816882 966.824158 242.911758 1239.892456 530.131958 188.982483 18200 6.493846 0.96872 0.961861 0.980728 1.823742 0.486331 3345.239014 773.823547 1445.391235 525.043701 173.161194 13800 6.493846 0.921263 0.957253 0.984406 6.371353 0.86698 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2112.757751 723.9124 2571.415467 0.018033562 0.022908697 0.020328249 0.787192826 0.887118314 1.126939023 -0.103918873 -0.052018455 0.051900418
3 2530 21730 2413.78125 909.838257 927.40863 817.300354 179.479706 6400 16.486326 0.934617 0.96965 0.976067 2.953359 0.787562 705.146667 362.705872 727.111694 616.957581 190.659378 15000 16.486326 0.969176 0.981667 0.983116 1.142942 0.304785 2452.883301 847.617676 697.346252 478.711884 156.352814 6000 16.486326 0.88959 0.980186 0.987389 5.123924 0.859628 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1503.942993 342.440795 1605.265625 0.01283699 0.01083677 0.01269038 1.184577059 1.011552813 0.853935846 0.073563318 0.004988562 -0.068574756
4 2770 21730 2701.214355 1062.970581 1136.403931 1016.554871 177.33873 8400 6.493846 0.936476 0.972603 0.971634 2.657224 0.708593 835.563477 401.794128 622.447205 665.121216 186.950348 12600 6.493846 0.953812 0.980141 0.97467 1.256257 0.335002 3318.808838 669.970581 1452.623657 467.387268 176.258484 15700 6.493846 0.907916 0.956085 0.98542 7.100769 0.861348 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1638.243774 433.769349 2648.838257 0.013983321 0.013726924 0.020940313 1.018678418 0.667770423 0.65552623 0.008037105 -0.175372821 -0.183409926
5 3030 21730 2677.534424 911 775.057251 870.92865 174.80777 5800 16.486326 0.937817 0.980469 0.972862 3.074344 0.80293 728.347534 280.735291 675.570129 498.726563 190.157852 14100 16.486326 0.969813 0.979156 0.98381 1.460415 0.389444 3119.836914 713.161743 1588.100952 568.926636 178.41243 9200 16.486326 0.914578 0.956818 0.984787 5.483724 0.857432 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1766.534424 447.612243 2406.675171 0.015078353 0.014164992 0.0190259 1.0644802 0.792517244 0.744511024 0.027137588 -0.100991279 -0.128128867
6 3280 21730 2544.797607 848.720581 875.179443 840.984314 186.609512 8400 16.486326 0.949801 0.976379 0.975769 3.025975 0.801034 685.352539 311.852936 676.410339 541.564026 191.824478 15600 16.486326 0.968175 0.98056 0.985008 1.265506 0.337468 2623 711.441162 1062.760132 509.512177 172.793152 12000 16.486326 0.952655 0.968468 0.985931 5.148061 0.860102 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1696.077026 373.499603 1911.558838 0.01447696 0.011819647 0.015111772 1.224821684 0.957992248 0.78214834 0.088072867 -0.018638005 -0.106710872
7 3520 21730 2948.428467 1131.691162 742.442993 836.554443 173.161194 5600 6.493846 0.916958 0.982735 0.97541 3.524491 0.818988 940.706421 330.147064 589.757996 520.948853 183.686844 10900 6.493846 0.942154 0.983574 0.98381 1.805756 0.481535 3193.79126 711.367676 1560.775757 512.265198 176.799423 9100 6.493846 0.940006 0.958229 0.985909 6.234644 0.860365 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1816.737305 610.559357 2482.423584 0.015506863 0.019321563 0.019624726 0.80256771 0.790169639 0.984551995 -0.095518318 -0.102279661 -0.006761344
8 3770 21730 3181.714355 1104.014648 1049.591919 1018.583313 167.365692 6300 6.493846 0.894232 0.970192 0.976761 3.123666 0.804827 867.965515 285.75 686.737122 424.246063 181.945694 11600 6.493846 0.951165 0.98008 0.98774 2.045901 0.545574 6469.26709 787.044128 3013.489746 539.8797 180.54068 14600 6.493846 0.92831 0.919991 0.983429 11.982794 0.853562 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2077.699707 582.215515 5682.222962 0.017734322 0.018424603 0.044920646 0.962534808 0.394792234 0.410158917 -0.016583556 -0.403631399 -0.387047843
9 4010 21740 2601.493408 878.897034 959.001465 746.874329 180.716904 7700 10.223437 0.936837 0.967949 0.981125 3.483174 0.817624 665.986084 229.632355 566.676453 474.255737 192.817535 14400 10.223437 0.970752 0.98288 0.984673 1.404276 0.374474 3368.90332 819.882324 1322.77417 483.694916 142.283218 9300 10.223437 0.890387 0.952919 0.983948 6.964934 0.888454 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1722.596374 436.353729 2549.020996 0.014703318 0.013808709 0.02015121 1.064785863 0.729649366 0.685254558 0.027262277 -0.136885791 -0.164148067
10 4270 21740 2653.265869 909.808838 715.866394 781.444641 177.518127 7900 11.58221 0.93507 0.979805 0.978355 3.395334 0.814655 700.294861 277.735291 618.593872 533.73175 188.138428 15600 11.58221 0.959669 0.980309 0.984047 1.312073 0.349886 3033.023926 807.5 1100.223877 607.269287 139.344559 12600 11.58221 0.853805 0.968727 0.983208 4.994529 0.857031 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1743.457031 422.55957 2225.523926 0.014881375 0.013372183 0.017593814 1.112860547 0.845829979 0.760050288 0.046440746 -0.072716926 -0.119157672
11 4520 21730 3930.833252 1032.691162 2075.713867 937.022095 174.443207 12000 6.493846 0.936795 0.939636 0.976143 4.195027 0.83858 1100.114868 370.191162 1128.243774 644.623291 190.157852 20900 6.493846 0.96466 0.96257 0.981934 1.706601 0.455094 2773.052734 720.264709 1477.060669 609.991211 179.124664 13300 6.493846 0.934105 0.952446 0.982613 4.546054 0.847236 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2898.14209 729.923706 2052.788025 0.024737254 0.023098929 0.016228255 1.070926451 1.524332334 1.423377239 0.029759645 0.183079662 0.153320017
12 4770 21730 2752.388916 848.235291 1465.19165 857.750427 188.138428 16200 6.493846 0.958018 0.954041 0.976753 3.208846 0.808019 649.482117 236.617645 566.490479 435.330811 190.157852 16800 6.493846 0.96728 0.983345 0.986504 1.491928 0.397847 2381.168213 729.323547 1022.139343 532.334045 175.715866 11300 6.493846 0.905017 0.971375 0.983772 4.473071 0.845514 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1904.153625 412.864472 1651.844666 0.01625301 0.013065375 0.013058609 1.243975741 1.244620276 1.000518125 0.094811911 0.095036872 0.000224961
13 5020 21740 10559.23926 1108.75 6532.971191 904.587036 159.377335 16300 11.58221 0.903039 0.801872 0.974884 11.672994 0.867915 2029.300049 363.411774 1737.74292 524.874512 186.950348 20000 11.58221 0.970376 0.950272 0.985306 3.866258 0.829534 2587.5 809.588257 842.475098 530.675537 165.067657 12400 11.58221 0.916736 0.977562 0.985023 4.875861 0.854564 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9450.489258 1665.888275 1777.911743 0.08066518 0.05271816 0.014055229 1.5301213 5.739158086 3.750786349 0.184725861 0.758848188 0.574122327
14 5290 21750 2214.173584 901.970581 631.505554 865.438477 180.89296 9800 32.945148 0.947739 0.982086 0.974106 2.558441 0.682251 671.439514 203.573532 685.195984 428.614136 191.658463 15700 32.945148 0.966806 0.979485 0.986816 1.566536 0.417743 2620.371338 882.279419 830.736694 592.412842 163.322906 7000 32.945148 0.901505 0.97551 0.982552 4.423218 0.844315 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1312.203003 467.865982 1738.091919 0.011200382 0.014805935 0.013740434 0.756479211 0.815140329 1.077544917 -0.121203002 -0.08876762 0.032435383
15 5530 21730 2614.918945 806.720581 909.937073 746.660095 182.64415 7400 16.486326 0.952652 0.969307 0.979904 3.502154 0.818253 859.86261 374.397064 598.406372 527.986084 190.492355 13100 16.486326 0.968505 0.980034 0.985947 1.628571 0.434285 2649.858398 732.852966 895.891418 526.211182 170.754776 12000 16.486326 0.906424 0.972626 0.984764 5.035732 0.857868 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1808.198364 485.465546 1917.005432 0.015433978 0.015362885 0.01515483 1.004627584 1.018419771 1.013728656 0.002005099 0.007926822 0.005921723
16 5770 21730 3574.447754 858.867676 2193.475586 856.638245 184.378693 17200 6.493846 0.952381 0.927948 0.975182 4.172646 0.837995 905.027954 384.044128 700.005432 628.222046 190.32518 17900 6.493846 0.970944 0.981392 0.984581 1.440618 0.384165 2506.672119 822.308838 701.340149 514.883423 137.736252 6100 6.493846 0.824058 0.978455 0.980598 4.868427 0.854406 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2715.580078 520.983826 1684.363281 0.023178986 0.016486885 0.013315684 1.405904473 1.740728108 1.238155323 0.147955813 0.240730942 0.092775129
17 6030 21730 2613.755615 1006.867676 1020.699951 994.038269 185.925949 13500 16.486326 0.959571 0.969765 0.969986 2.629432 0.701182 1415.474487 424.441162 860.138 610.784668 186.268051 13700 16.486326 0.967587 0.971794 0.983742 2.317469 0.617992 3447.4375 661.691162 1457.439331 457.919922 179.656982 14400 16.486326 0.955258 0.959602 0.985176 7.528472 0.855169 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1606.887939 991.033325 2785.746338 0.013715682 0.031361919 0.022022635 0.43733554 0.6227993 1.424076579 -0.359185228 -0.205651884 0.153533344
18 6270 21750 1862.640747 714.514709 800.413391 738.523743 185.925949 10300 20.642797 0.960056 0.976639 0.978165 2.522114 0.672564 622.309875 356.176483 520.40802 615.197266 186.438858 14200 20.642797 0.965967 0.982124 0.981987 1.011562 0.26975 2657 749.632324 1455.117798 528.364502 170.754776 11600 20.642797 0.917117 0.961884 0.984184 5.028725 0.857727 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1148.126038 266.133392 1907.367676 0.009799894 0.008421971 0.015078639 1.163610514 0.649919011 0.558536558 0.065807637 -0.187140759 -0.252948395
19 2010 21970 1973.446411 848.911743 747.693848 912.326233 186.950348 11200 10.980145 0.964032 0.979431 0.968857 2.163093 0.576825 686.934204 213.470581 662.525391 393.622559 190.992981 15200 10.980145 0.969794 0.980057 0.988586 1.74516 0.465376 2188.829834 817.176453 528.607483 514.112976 162.737167 4700 10.980145 0.927404 0.982605 0.979462 4.257488 0.840191 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1124.534668 473.463623 1371.653381 0.009598529 0.014983076 0.010843565 0.640624688 0.885181979 1.381748152 -0.193396329 -0.052967436 0.140428892
20 2260 21970 2173.233887 863.544128 641.89447 715.719299 181.42009 7700 10.980145 0.940216 0.98056 0.982018 3.036433 0.801447 656.158264 285.720581 611.202698 446.057831 188.982483 13900 10.980145 0.964405 0.983101 0.9888 1.471016 0.392271 2646.411865 880.352966 749.191162 582.635681 148.2005 6800 10.980145 0.87814 0.981415 0.983414 4.542138 0.847145 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1309.689759 370.437683 1766.058899 0.01117893 0.011722751 0.013961526 0.953609814 0.800695415 0.839646785 -0.020629288 -0.096532659 -0.075903371

Total number of rows: 5184

Table truncated, full table size 2743 Kbytes.




Supplementary data files not provided

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