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Sample GSM12051 Query DataSets for GSM12051
Status Public on May 10, 2004
Title RE3_SL1344_HS_37C_10 min_3D140_3
Sample type RNA
 
Channel 1
Source name SL1344 10 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name SL1344 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium SL1344 Expression after heatshock with 37C
User - PCheng
Date_of_Scan = Fri Jul 18 12:29:33 2003
Sample_target_source3: SL1344 genomic DNA
 
Submission date Oct 22, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE807 SL1344_heat_shock_37C_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 1970 40500 17107.5332 1100.573486 21974.36914 828.812134 181.77066 21400 12.812445 0.943131 0.515915 0.97715 20.641026 0.589617 1606.105957 440.617645 1695.793457 655.583557 187.630173 15100 12.812445 0.962573 0.955986 0.980713 2.449887 0.653303 4628.070801 770.852966 4003.478027 507.910858 160.174225 11300 12.812445 0.905641 0.887383 0.98513 9.111975 0.890592 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 16006.95972 1165.488312 3857.217835 0.138919421 0.039818987 0.030770086 3.488773354 4.514755757 1.294081128 0.542672757 0.65463426 0.111961504
2 2220 40500 3834.854492 1050.014648 1689.234619 877.46521 167.365692 11000 12.812445 0.910142 0.956116 0.975082 4.370378 0.843023 1106.75 450.25 750.483887 635.065735 186.609512 12800 12.812445 0.950136 0.977303 0.982147 1.742733 0.464729 5941.631348 761.132324 3046.920166 532.80896 159.776276 14100 12.812445 0.901419 0.918129 0.983856 11.151523 0.891316 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2784.839844 656.5 5180.499024 0.024168758 0.022429367 0.041326263 1.077549726 0.584828061 0.542738814 0.032437321 -0.232971798 -0.265409118
3 2470 40490 2960.088135 1168.602905 629.033508 954.655579 168.31395 3400 8.086661 0.920835 0.979813 0.969963 3.100687 0.803948 726.066223 385.838226 701.62677 783.218628 191.990341 15100 8.086661 0.974498 0.980392 0.979103 0.927029 0.247208 3052.975098 666.352966 1661.16333 468.92749 181.77066 16000 8.086661 0.94543 0.956718 0.985817 6.510548 0.851326 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1791.48523 340.227997 2386.622132 0.015547743 0.011623913 0.01903874 1.337565354 0.816637169 0.610540014 0.126315011 -0.087970857 -0.214285868
4 2720 40500 2577.573975 886.720581 997.440063 852.152344 180.010986 10800 12.812445 0.956658 0.970459 0.97744 3.024781 0.800986 641.560242 309.455872 612.245911 771.036194 186.950348 16600 12.812445 0.966965 0.981895 0.987099 0.832075 0.221887 4420.460449 779.602966 2025.910278 573.180359 167.745636 15200 12.812445 0.913125 0.945045 0.979958 7.712163 0.876826 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1690.853394 332.10437 3640.857483 0.01467439 0.011346368 0.02904412 1.293311653 0.505244796 0.390659741 0.111703191 -0.296498151 -0.408201342
5 2980 40500 2264.394287 873.044128 769.241333 847.773376 187.290573 10400 20.637035 0.965747 0.980095 0.976563 2.67099 0.712264 828.166687 203.808823 736.266174 328.825287 192.487091 15000 20.637035 0.975049 0.975655 0.991043 2.518561 0.671616 3652.603271 698.470581 2564.812012 473.169617 181.77066 12100 20.637035 0.948312 0.940186 0.985657 7.719437 0.851326 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1391.350159 624.357864 2954.13269 0.012075095 0.021331229 0.023565927 0.566075923 0.512396339 0.905172466 -0.247125317 -0.290393982 -0.043268665
6 3220 40500 2420.692383 841.970581 666.847412 864.122314 177.876389 7800 12.812445 0.952175 0.983124 0.968666 2.801331 0.747021 702.720764 266 669.657104 536.369873 191.990341 15400 12.812445 0.970623 0.980568 0.985085 1.310142 0.349371 2784.787842 742.676453 1309.650146 505.879822 174.077881 13200 12.812445 0.921019 0.954201 0.985245 5.504841 0.865313 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1578.721802 436.720764 2042.111389 0.013701235 0.014920594 0.016290483 0.918276759 0.841057628 0.915908651 -0.037026407 -0.075174246 -0.038147839
7 3470 40500 3164.57959 1051.573486 1160.009521 929.122437 175.896927 6900 12.812445 0.922507 0.96624 0.973244 3.405988 0.81502 631.177185 277.676483 659.831177 520.36322 190.992981 15800 12.812445 0.973418 0.980705 0.985046 1.212955 0.323455 3423.222168 732.926453 2215.561523 630.117004 180.010986 11700 12.812445 0.929877 0.945953 0.986008 5.432677 0.854526 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2113.006104 353.500702 2690.295715 0.018338122 0.012077375 0.021461227 1.518386376 0.854476861 0.562753245 0.181382298 -0.068299694 -0.249681992
8 3720 40500 3058.350586 996.691162 1129.050171 846.662537 181.42009 9700 12.812445 0.944542 0.959984 0.97625 3.612243 0.821818 747.745667 411.573517 718.44165 731.512573 192.817535 17300 12.812445 0.972626 0.98159 0.978531 1.022191 0.272584 9239.681641 710.308838 4668.520996 594.223999 178.055252 16000 12.812445 0.946512 0.889328 0.983322 15.549156 0.858081 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2061.659424 336.17215 8529.372803 0.0178925 0.011485344 0.068041148 1.557854952 0.262965879 0.168799977 0.192527019 -0.580100599 -0.772627618
9 3970 40500 3036.746582 1058.867676 960.380249 854.684692 178.41243 7500 12.812445 0.951584 0.969612 0.974625 3.553061 0.819919 692.673767 292.941162 535.598267 509.992126 191.49231 14100 12.812445 0.973652 0.983574 0.984978 1.358205 0.362188 5436.149902 864.191162 2867.666992 479.627472 135.170227 12000 12.812445 0.825795 0.9347 0.986694 11.334109 0.883863 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1977.878906 399.732605 4571.95874 0.017165395 0.013656892 0.03647177 1.256903548 0.470648817 0.374451021 0.099301952 -0.327303029 -0.426604981
10 4210 40510 2227.311035 854.176453 830.149963 637.610901 186.950348 11900 20.02985 0.960413 0.977669 0.98262 3.493214 0.817957 655.858093 316.235291 633.819763 467.818756 193.312149 14800 20.02985 0.974453 0.982292 0.987984 1.401949 0.373853 3175.174561 728.382324 1482.86084 577.069336 173.161194 14900 20.02985 0.911633 0.944138 0.985077 5.502241 0.866706 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1373.134582 339.622802 2446.792237 0.011917008 0.011603236 0.019518733 1.027041734 0.610542057 0.594466648 0.011588091 -0.214284414 -0.225872506
11 4470 40480 4653.708496 1070.279419 2261.840088 806.722473 170.568253 12000 12.908503 0.924711 0.940742 0.976448 5.768661 0.871278 1437.716309 415.323517 1429.474365 701.138611 192.156067 20800 12.908503 0.970439 0.960785 0.980003 2.050545 0.546812 3959.64624 763.5 1895.631958 521.643494 169.256897 13000 12.908503 0.91764 0.948105 0.983643 7.590713 0.874078 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 3583.429077 1022.392792 3196.14624 0.031099466 0.034930119 0.025496536 0.890333801 1.219752581 1.369994691 -0.050447138 0.086271746 0.136718884
12 4720 40500 4325.146484 1194.852905 2355.317627 1232.90686 178.590759 15000 12.812445 0.934327 0.929893 0.972832 3.508089 0.818449 790.272217 326.911774 802.342896 522.045288 193.147415 16900 12.812445 0.974458 0.974281 0.985397 1.5138 0.40368 3990.980957 669.397034 5320.865234 531.144226 179.479706 15700 12.812445 0.951792 0.956123 0.982773 7.513931 0.855491 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 3130.293579 463.360443 3321.583923 0.027166844 0.015830741 0.026497187 1.71608163 1.025272751 0.597449873 0.234537942 0.010839415 -0.223698527
13 4970 40490 9605.146484 864.573547 7488.986328 998.926331 189.655014 21200 8.086661 0.963876 0.793213 0.971283 9.61547 0.836991 2090.637451 238.691177 1953.485596 477.442657 189.655014 22900 8.086661 0.965761 0.940659 0.985512 4.378824 0.836991 3058.857178 744.852966 1379.694092 557.281311 165.260376 14000 8.086661 0.875475 0.952629 0.985039 5.488892 0.866469 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8740.572937 1851.946274 2314.004212 0.075856712 0.06327187 0.018459447 1.198901063 4.109370801 3.427614613 0.078783345 0.613775331 0.534991986
14 5230 40510 2780.380371 883.955872 3435.88501 767.503418 184.551254 9200 26.919359 0.964848 0.960533 0.976234 3.622629 0.822147 752.452393 253.558823 914.301147 454.936493 189.150833 16800 26.919359 0.965957 0.975227 0.985725 1.653972 0.441059 4091.588867 684.720581 3122.446045 440.948456 172.424332 10700 26.919359 0.942687 0.930603 0.98687 9.279064 0.868319 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1896.424499 498.89357 3406.868286 0.016458478 0.017044733 0.027177524 0.965604938 0.605591524 0.627162829 -0.015200522 -0.217820212 -0.20261969
15 5480 40500 2209.664551 673.367676 1032.16394 744.128784 186.438858 15500 20.637035 0.960879 0.971931 0.977478 2.969465 0.791857 533.703979 306.985291 497.671936 541.211243 182.818344 12500 20.637035 0.960388 0.986282 0.983627 0.986129 0.262968 6896.27832 631.5 4167.557617 530.522156 179.834061 16900 20.637035 0.955356 0.895134 0.984093 12.999039 0.854847 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1536.296875 226.718688 6264.77832 0.013333042 0.007745859 0.049975857 1.721312231 0.266789672 0.154992027 0.235859655 -0.573830986 -0.809690641
16 5710 40500 6229.205078 908.411743 3804.202393 817.700378 175.534622 15100 10.120782 0.924217 0.892136 0.979546 7.617955 0.862664 895.909119 255.014709 872.816589 431.381836 187.969162 19800 10.120782 0.963537 0.975769 0.989365 2.076836 0.553823 2796.516846 650.5 1407.484985 521.014099 173.528442 14900 10.120782 0.928859 0.960106 0.985085 5.367449 0.864268 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 5320.793335 640.89441 2146.016846 0.046177509 0.021896201 0.017119366 2.108927911 2.697384383 1.279031099 0.324061735 0.430942839 0.106881104
17 5970 40500 2741.700684 864.632324 1118.645264 798.818909 181.42009 14700 12.812445 0.943083 0.961639 0.98098 3.432193 0.815912 958.826599 322.735291 821.018494 526.569885 187.290573 17300 12.812445 0.955252 0.975967 0.98555 1.820891 0.485571 4086.720703 687.661743 1887.91394 476.680023 168.31395 13600 12.812445 0.910682 0.947037 0.985703 8.5733 0.875793 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1877.06836 636.091308 3399.05896 0.016290492 0.021732103 0.027115226 0.749604967 0.600787608 0.801472288 -0.125167545 -0.221279034 -0.096111489
18 6220 40500 2729.985107 1070.676514 859.164063 1028.946289 182.64415 6700 12.812445 0.949611 0.975464 0.971748 2.653185 0.707516 820.009644 338.75 881.160583 563.737732 187.120529 10400 12.812445 0.956474 0.971962 0.984993 1.454594 0.387892 3434.304688 634.058838 1880.968018 410.365479 172.239624 12800 12.812445 0.89415 0.938766 0.988693 8.368893 0.868655 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1659.308593 481.259644 2800.24585 0.014400623 0.016442268 0.02233833 0.875829449 0.644659779 0.736056294 -0.057580456 -0.190669425 -0.133088969
19 1960 40740 2295 858.382324 694.129761 745.39502 184.378693 8200 1.914571 0.961725 0.980515 0.975708 3.078904 0.803107 809.895508 334.132355 632.415161 538.301086 186.609512 13400 1.914571 0.965135 0.980812 0.98558 1.50454 0.401211 2272.078857 749.529419 1560.757202 503.32135 172.793152 7600 1.914571 0.927403 0.935257 0.982964 4.514171 0.846489 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1436.617676 475.763153 1522.549438 0.012467958 0.01625448 0.012145795 0.767047448 1.026524637 1.338280493 -0.115177771 0.011369377 0.126547148
20 2220 40740 2096.707031 958.205872 771.148376 1049.141602 183.166229 9900 8.086661 0.936853 0.974937 0.968628 1.998498 0.532933 869.243713 320.514709 780.027832 531.49054 187.799744 11900 8.086661 0.960788 0.980751 0.983818 1.635483 0.436129 2944.610352 741.279419 1217.1521 474.999329 158.777039 13600 8.086661 0.903913 0.963051 0.982933 6.199188 0.878037 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1138.501159 548.729004 2203.330933 0.009880697 0.018747364 0.017576576 0.527044625 0.56215143 1.06661069 -0.278152612 -0.25014668 0.028005932

Total number of rows: 5184

Table truncated, full table size 2743 Kbytes.




Supplementary data files not provided

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