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Sample GSM12063 Query DataSets for GSM12063
Status Public on May 10, 2004
Title RE3_SL1344_HS_37C_30 min_3D142_1
Sample type RNA
 
Channel 1
Source name SL1344 30 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name SL1344 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium SL1344 Expression after heatshock with 37C
User - PCheng
Date_of_Scan = Fri Jul 18 13:21:54 2003
Sample_target_source3: SL1344 genomic DNA
 
Submission date Oct 22, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE807 SL1344_heat_shock_37C_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2330 3050 18794.94141 1383.25 20549.55469 1009.017334 170.754776 10300 10.191231 0.903644 0.521049 0.971886 18.626976 0.595485 601.151367 259.088226 572.048706 394.754059 189.655014 18500 10.191231 0.97016 0.982162 0.991203 1.52285 0.406093 2777.076904 1076.397095 522.788391 596.304565 172.977264 3900 10.191231 0.885608 0.984711 0.981873 4.657145 0.849785 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 17411.69141 342.063141 1700.679809 0.266118585 0.013701805 0.019429211 19.42215595 13.69682906 0.705216717 1.288297437 1.136620036 -0.151677401
2 2590 3050 2956.071533 1148.117676 944.082947 972.752319 187.460449 7000 18.396507 0.958447 0.972176 0.970886 3.038874 0.801543 830.184204 350.044128 674.489136 526.812988 187.969162 15200 18.396507 0.963065 0.981255 0.985901 1.575861 0.42023 3030.225342 1077.25 913.294983 578.877441 160.372833 7100 18.396507 0.88653 0.97155 0.982971 5.234658 0.861776 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1807.953857 480.140076 1952.975342 0.02763259 0.019232664 0.022311531 1.436753091 1.238489167 0.862005569 0.15738214 0.092892212 -0.064489928
3 2840 3060 2567.600098 982.426453 717.727356 840.646362 181.244553 6000 16.892174 0.955948 0.979149 0.976463 3.054317 0.802149 760.01416 308.470581 609.854126 452.453094 189.990387 14100 16.892174 0.974704 0.980446 0.987953 1.679763 0.447937 3013 1227.161743 497.864227 649.899597 141.835083 1600 16.892174 0.843797 0.984283 0.980492 4.636101 0.787658 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1585.173645 451.543579 1785.838257 0.024227639 0.018087192 0.020402094 1.339491393 1.187507471 0.886536097 0.126939927 0.074636351 -0.052303577
4 3080 3060 2865.538574 1236.647095 783.174255 957.201416 158.977386 3900 7.125675 0.889108 0.973083 0.973564 2.993663 0.79831 938.580383 286.676483 594.42511 359.390717 186.438858 11200 7.125675 0.956929 0.981888 0.990425 2.611588 0.696423 2644.465088 1104.75 455.087921 528.836487 136.575851 4300 7.125675 0.850556 0.983643 0.983208 5.000534 0.857154 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1628.891479 651.9039 1539.715088 0.024895818 0.026112898 0.017590289 0.953391613 1.415315998 1.484506449 -0.020728673 0.150853416 0.171582089
5 3340 3070 2708.424316 972.558838 758.993164 857.861267 183.166229 6600 20.790854 0.955943 0.978745 0.975166 3.157182 0.806096 715.748413 247.352936 692.59967 520.39093 191.824478 15900 20.790854 0.969148 0.979362 0.982117 1.375405 0.366775 2655.517334 1016.544128 497.597046 542.143372 155.945114 2900 20.790854 0.892708 0.984634 0.981903 4.898183 0.831797 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1735.865478 468.395477 1638.973206 0.026530798 0.018762218 0.018724252 1.414054436 1.41692167 1.002027669 0.150466128 0.151345842 0.000879714
6 3580 3060 2687.30127 1015.367676 876.954163 928.95697 186.779999 7300 7.125675 0.96377 0.974495 0.970444 2.892816 0.771417 787.796326 341.235291 665.93457 605.714233 187.799744 16200 7.125675 0.958713 0.976524 0.983177 1.300607 0.346829 2677.800049 1019.338257 563.478882 590.783752 166.794159 3500 7.125675 0.850085 0.984528 0.982933 4.532623 0.846922 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1671.933594 446.561035 1658.461792 0.025553669 0.01788761 0.018946897 1.428568117 1.348699459 0.94409181 0.154900953 0.129915183 -0.02498577
7 3830 3060 2439.373047 983.117676 675.988586 887.582153 184.378693 6700 7.125675 0.947411 0.979088 0.977623 2.748335 0.732889 752.366638 246.573532 655.701355 474.406555 190.492355 18000 7.125675 0.970498 0.981285 0.984543 1.585911 0.42291 2916.449951 1056.5 1138.657959 517.783875 129.148911 2000 7.125675 0.792478 0.962151 0.984016 5.632562 0.80124 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1456.255371 505.793106 1859.949951 0.022257264 0.020260231 0.021248774 1.098569126 1.047461121 0.953477661 0.04082739 0.020137912 -0.020689478
8 4080 3060 2339.224365 980.044128 780.765808 1108.20166 182.818344 10700 7.125675 0.959314 0.976234 0.971954 2.110829 0.562888 782.658203 341.264709 868.815063 497.065033 190.659378 15800 7.125675 0.967567 0.979477 0.987602 1.574559 0.419882 2973.989014 940.470581 864.045654 495.130341 163.906555 9200 7.125675 0.882032 0.971756 0.984627 6.006477 0.875101 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1359.180237 441.393494 2033.518433 0.020773577 0.017680617 0.023231686 1.174935101 0.894191562 0.761056131 0.070013879 -0.048569432 -0.118583311
9 4340 3060 2740.217285 1046.588257 866.289917 944.068848 153.268631 4600 16.892174 0.908916 0.970467 0.976349 2.902561 0.774016 703.660583 324.882355 613.9552 547.278198 188.645309 16500 16.892174 0.956726 0.985474 0.986885 1.285746 0.342866 2913.281982 1053.985352 1064.683594 635.196655 134.698425 3900 16.892174 0.799615 0.96138 0.979355 4.586425 0.848173 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1693.629028 378.778228 1859.29663 0.02588526 0.015172477 0.02124131 1.706066816 1.218628235 0.714291037 0.231996036 0.085871236 -0.146124799
10 4600 3070 2572.041748 977.5 526.923279 868.803345 163.5177 2400 29.441977 0.90935 0.981979 0.980087 2.960442 0.789451 763.986938 293.382355 567.015747 475.010895 191.159576 15300 29.441977 0.971585 0.983887 0.986633 1.608357 0.428895 2673.69043 1008.75 731.771057 547.994141 158.174469 4200 29.441977 0.91496 0.971809 0.984055 4.879049 0.854631 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1594.541748 470.604583 1664.94043 0.02437082 0.018850707 0.019020911 1.292833202 1.281264593 0.991051738 0.111542497 0.107638825 -0.003903672
11 4860 3080 2144.284424 735.308838 708.138306 677.252197 186.779999 10200 42.992027 0.965911 0.97789 0.982315 3.166154 0.806432 753.021606 298.588226 542.523376 447.872681 188.307541 13900 42.992027 0.964148 0.983986 0.987289 1.68133 0.448355 2522.125 1086.058838 238.669189 645.403625 108.230339 800 42.992027 0.758279 0.995483 0.980522 3.907826 0.760496 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1408.975586 454.43338 1436.066162 0.021534645 0.018202947 0.016406165 1.183030655 1.312594707 1.109518762 0.072995998 0.118130649 0.04513465
12 5090 3080 2500 774.764709 2099.973633 727.930847 187.120529 8000 27.913683 0.956683 0.926781 0.981155 3.434392 0.815987 680.358521 246.117645 624.596069 431.226166 188.476501 15900 27.913683 0.968439 0.980896 0.986618 1.57773 0.420728 2609.833252 1051.632324 489.678131 689.450012 136.808716 2400 27.913683 0.862949 0.98584 0.981873 3.785384 0.814821 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1725.235291 434.240876 1558.200928 0.026368327 0.017394109 0.017801478 1.515934323 1.48124366 0.977115985 0.180680386 0.170626505 -0.010053882
13 5340 3070 2014.696655 733.955872 737.7099 763.964722 181.068848 8900 20.790854 0.941547 0.977013 0.97995 2.637159 0.703242 898.703674 353.691162 724.507996 701.075317 190.826248 18900 20.790854 0.965728 0.977745 0.985641 1.281893 0.341838 2311.100098 888.808838 420.153473 500.314972 155.740875 5000 20.790854 0.885364 0.985779 0.985855 4.61929 0.848926 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1280.740783 545.012512 1422.29126 0.019574717 0.021831218 0.016248795 0.896638786 1.204687288 1.343559197 -0.047382479 0.080874328 0.128256806
14 5590 3080 1771.115845 708.720581 852.816406 780.641602 187.120529 9500 27.913683 0.958699 0.980293 0.978317 2.268795 0.605012 603.196228 316.117645 486.9198 517.231506 190.32518 15800 27.913683 0.96447 0.984612 0.985664 1.166202 0.310987 2466.363525 961.838257 381.02182 577.204102 166.984879 4400 27.913683 0.86205 0.989243 0.981636 4.272949 0.840585 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1062.395264 287.078583 1504.525268 0.016237545 0.011499323 0.017188267 1.412043536 0.94468772 0.669021667 0.149848087 -0.02471173 -0.174559817
15 5830 3070 1918.339966 731.514709 723.333557 690.674744 174.260635 5000 14.060203 0.926016 0.97715 0.981087 2.777487 0.740663 912.419067 474.882355 488.059052 661.306335 190.492355 10500 14.060203 0.966646 0.988701 0.981575 1.379722 0.367926 2330.77002 819.073547 550.581238 541.764648 159.17749 8700 14.060203 0.893335 0.984001 0.984589 4.302182 0.841325 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1186.825257 437.536712 1511.696473 0.018139321 0.017526128 0.017270194 1.034987337 1.05032526 1.01481943 0.014935036 0.02132381 0.006388774
16 6080 3070 1127.617676 469.279419 575.342773 598.205017 189.822784 13600 14.060203 0.964944 0.983276 0.984146 1.885002 0.502667 699.886902 305.735291 641.318115 506.406616 188.982483 16800 14.060203 0.95856 0.981354 0.986626 1.382065 0.368551 2004.268311 780.352966 390.144989 534.893372 148.843445 4100 14.060203 0.840337 0.989906 0.985001 3.747043 0.825997 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 658.338257 394.151611 1223.915345 0.010061977 0.015788279 0.013982473 0.637306785 0.719613568 1.129147822 -0.195651458 -0.142900657 0.052750801
17 6340 3090 1579.378662 537.911743 810.907349 597.649902 178.41243 10300 36.415489 0.944981 0.981033 0.981186 2.642649 0.704706 703.831543 310.102936 664.956543 594.468933 191.658463 18400 36.415489 0.969466 0.980431 0.978363 1.183967 0.315725 2244.952393 837.955872 493.315033 610.19574 143.840698 6300 36.415489 0.841951 0.987549 0.981667 3.679069 0.823915 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1041.466919 393.728607 1406.996521 0.015917678 0.015771335 0.016074062 1.009279063 0.990271057 0.981166749 0.004011264 -0.004245914 -0.008257178
18 6590 3070 1784.939941 743.235291 824.081116 817.046814 172.054718 5000 20.790854 0.930914 0.962234 0.975899 2.184624 0.582566 598.15332 364.161774 449.883972 612.479492 189.150833 15000 20.790854 0.971273 0.987259 0.985069 0.97661 0.260429 2153.972168 856.176453 478.898346 565.788513 169.632599 3600 20.790854 0.91545 0.985611 0.984215 3.807027 0.827795 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1041.70465 233.991546 1297.795715 0.015921312 0.00937285 0.01482651 1.698662858 1.07384079 0.632168288 0.230107191 0.030939897 -0.199167294
19 2320 3290 2847.777832 1024.294067 791.80426 784.187744 168.50296 4500 17.954855 0.877348 0.974258 0.97541 3.6315 0.822427 592.598694 289.970581 551.435608 517.239868 186.438858 15200 17.954855 0.948409 0.985817 0.984955 1.145694 0.305518 3050.166748 1324.147095 145.543686 632.219543 76.530403 600 17.954855 0.621614 0.99707 0.982323 4.824537 0.710416 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1823.483765 302.628113 1726.019653 0.027869947 0.012122181 0.019718703 2.299086896 1.413376267 0.614755479 0.361555386 0.150257794 -0.211297592
20 2570 3290 2727.254883 1080.808838 1101.883423 958.910583 182.295258 5100 17.954855 0.940315 0.986221 0.971497 2.844118 0.758431 616.281433 259.632355 590.775574 585.485596 191.326019 16700 17.954855 0.965627 0.98259 0.989662 1.052599 0.280693 2631.416748 1140.485352 354.866272 611.298462 161.559326 2400 17.954855 0.866316 0.989494 0.978935 4.304635 0.814821 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1646.446045 356.649078 1490.931396 0.02516412 0.014286064 0.017032966 1.761445265 1.477377474 0.838730276 0.245869153 0.169491473 -0.07637768

Total number of rows: 5184

Table truncated, full table size 2739 Kbytes.




Supplementary data files not provided

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