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Sample GSM120743 Query DataSets for GSM120743
Status Public on Jul 01, 2008
Title epithelium_17: 24h; Air
Sample type RNA
 
Source name 24h; Air
Organism Rattus rattus
Characteristics Additional Information: All 18 samples will be available 12/16/05. RNA was isolated from LCM samples using Arcturus\' PicoPure Isolation kit. Samples went through two amplifications using Arcturus\' Ribo Amp OA kit with an Affymetrix IVT label.
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ug
Ratio: 1.83
RNA Integrity Number: 5.1
Technical Replicate: norvegicus
Strain or Line: Sprague-Dawley rat
NCBI Taxonomy ID: 10116
Developmental State: adult
Sacrifice Method: 60 mg/kg sodium pentbarbital IP
Sex: male
Age: 60
Units of Age: days
Biomaterial provider Elizabeth S. Roberts, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Elizabeth, eroberts@ciit.org, 558-1347, 558-1300
Treatment protocol in vivo Treatment: Air, Treatment Duration: 3, Units of Duration: hr, Treatment Time: 1, Units of Treatment Time: exposure, Route of Exposure: inhalation, Dose or Concentration: 200, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: PicoPure Nucleic acid spin column
Additional Purification Method: Ribo Amp OA and Affymetrix IVT label
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description ER_17_Rat230_2_IMF RT 0023: frozen sample for laser capture microdissection and RNA microarray analysis.
Data processing Affymetrix GCOS 1.0
 
Submission date Jul 17, 2006
Last update date Dec 30, 2007
Contact name Elizabeth Sherman Roberts
E-mail(s) elizabeth.roberts@novartis.com
Phone (336) 387-1487
Fax (336) 387-1459
Organization name Novartis Animal Health US
Street address 3200 Northline Ave, Suite 300
City Greensboro
State/province NC
ZIP/Postal code 27408
Country USA
 
Platform ID GPL1355
Series (1)
GSE5349 Gene Expression Changes in Laser Capture Microdissected Nasal Respiratory Epithelium of Rats Exposed to Hydrogen Sulfide

Data table header descriptions
ID_REF Affymetrix probe name
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1101.87 P 0.000972
AFFX-BioB-M_at 1873.84 P 4.4e-05
AFFX-BioB-3_at 1050.9 P 4.4e-05
AFFX-BioC-5_at 3111.67 P 4.4e-05
AFFX-BioC-3_at 2899.16 P 4.4e-05
AFFX-BioDn-5_at 6437.7 P 5.2e-05
AFFX-BioDn-3_at 9540.99 P 0.000446
AFFX-CreX-5_at 31931.2 P 5.2e-05
AFFX-CreX-3_at 33923 P 4.4e-05
AFFX-r2-Ec-bioB-5_at 1501.03 P 0.000244
AFFX-r2-Ec-bioB-M_at 1484.38 P 0.000244
AFFX-r2-Ec-bioB-3_at 1714.54 P 0.000244
AFFX-r2-Ec-bioC-5_at 3591.79 P 0.000244
AFFX-r2-Ec-bioC-3_at 4153.4 P 0.000244
AFFX-r2-Ec-bioD-5_at 16247.3 P 0.000244
AFFX-r2-Ec-bioD-3_at 17892.8 P 0.000244
AFFX-r2-P1-cre-5_at 40285 P 0.000244
AFFX-r2-P1-cre-3_at 49233.4 P 0.000244
AFFX_Rat_GAPDH_5_at 117.419 P 0.000581
AFFX_Rat_GAPDH_M_at 126.792 P 0.005565

Total number of rows: 31099

Table truncated, full table size 905 Kbytes.




Supplementary data files not provided

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