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Sample GSM12085 Query DataSets for GSM12085
Status Public on May 10, 2004
Title RE3_SL1344_HS_42C_30 min_3D172_2
Sample type RNA
 
Channel 1
Source name SL1344 150 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name SL1344 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium SL1344 Expression after heatshock with 37C
User - PCheng
Date_of_Scan = Fri Aug 01 12:02:16 2003
Sample_target_source3: SL1344 genomic DNA
 
Submission date Oct 22, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE808 SL1344_heat_shock_42C_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2500 22460 7539.021484 1470.088257 7222.48291 1050.219238 180.187729 9400 71.121193 0.945641 0.776138 0.971184 7.178522 0.850759 1299.432007 546.838257 791.458313 812.457764 189.822784 12500 71.121193 0.968138 0.976318 0.97876 1.599384 0.426502 5143.625 1814.132324 1653.870972 920.191284 118.345421 2400 71.121193 0.764551 0.956841 0.970383 5.589735 0.814821 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 6068.933227 752.59375 3329.492676 0.041977009 0.023138255 0.023778777 1.814182128 1.765314066 0.973063309 0.258680884 0.246821982 -0.011858903
2 2760 22470 4452.470703 1860.617676 952.492432 1033.217285 139.572815 1700 76.045486 0.757634 0.97039 0.965416 4.309327 0.791054 1162.453369 425.588226 688.215881 581.343018 191.658463 15000 76.045486 0.966217 0.979012 0.983215 1.9996 0.533227 6139 1816.485352 4371.94873 992.704956 139.572815 3300 76.045486 0.807516 0.839874 0.968987 6.184113 0.845379 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2591.853027 736.865143 4322.514648 0.017927078 0.022654684 0.030870802 0.791318812 0.580713047 0.733854722 -0.10164851 -0.236038417 -0.134389907
3 3010 22480 4649.680176 2076.323486 760.664856 1260.270996 167.745636 2500 73.309433 0.901856 0.976395 0.958794 3.689429 0.818216 1295.819824 482.470581 569.163147 648.908142 185.239883 11100 73.309433 0.94811 0.984261 0.980354 1.996923 0.532513 5068.611328 1982.897095 2524.358154 964.072693 161.559326 1800 73.309433 0.893559 0.916634 0.969788 5.257499 0.794449 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 2573.35669 813.349243 3085.714233 0.017799144 0.025006163 0.022037745 0.71179028 0.807666314 1.134697027 -0.147647947 -0.09276803 0.054879917
4 3250 22480 4459.100098 1980.705933 378.126404 1176.785645 146.689301 2000 63.568375 0.813739 0.990173 0.960197 3.78922 0.80124 1350.13269 415.176483 674.702881 473.309174 187.460449 9800 63.568375 0.962755 0.979149 0.989326 2.852539 0.760677 4739.522949 1704.485352 1397.554443 966.584045 156.149109 4400 63.568375 0.881025 0.93924 0.969521 4.903374 0.855143 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2478.394165 934.956207 3035.037597 0.017142316 0.028744931 0.021675819 0.596359636 0.790849763 1.326128924 -0.224491759 -0.101906011 0.122585748
5 3510 22490 4665.111328 1962.205933 759.662842 1049.75708 118.882133 900 71.872322 0.810028 0.985733 0.964073 4.443991 0.763891 1740.387085 520.867676 1919.384155 580.440552 185.067963 9300 71.872322 0.971275 0.921463 0.985725 2.99839 0.799571 7601.193359 1738.941162 11194.04297 919.259705 146.254669 3100 71.872322 0.873789 0.575378 0.974358 8.26882 0.657575 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 2702.905395 1219.519409 5862.252197 0.018695194 0.037493736 0.041867395 0.498621799 0.446533487 0.89553543 -0.302228739 -0.350145967 -0.047917228
6 3750 22490 22938.26953 2593.896973 27029.05664 5348.043945 157.771469 3700 61.90554 0.840254 0.526268 0.934952 4.289095 0.601449 5129.508301 1528.147095 14177.84277 6839.984863 187.630173 12400 61.90554 0.962165 0.503777 0.960632 0.74993 0.199981 27131.14648 6231.014648 27275.24805 14205.46777 146.689301 4100 61.90554 0.821491 0.532181 0.500008 1.909909 0.430114 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 0 0 0 1 20344.37256 3601.361206 20900.13184 0.140715983 0.110722703 0.149265854 1.270886454 0.942720521 0.741781863 0.104106751 -0.025617039 -0.12972379
7 4000 22490 3937.904785 1709.220581 443.170502 997.33197 163.322906 2100 61.90554 0.908128 0.988739 0.968208 3.948439 0.804635 1145.169067 394.220581 671.286316 556.332031 190.826248 14200 61.90554 0.969532 0.977509 0.983192 2.058427 0.548914 4320 1683.705933 846.493774 1115.10144 133.511642 2500 61.90554 0.869698 0.973686 0.965614 3.874087 0.818216 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2228.684204 750.948486 2636.294067 0.015415147 0.023087672 0.018828048 0.667678699 0.818733139 1.226238218 -0.175432479 -0.086857631 0.088574848
8 4250 22490 4718.399902 2003.617676 499.656677 1483.740112 104.945343 500 61.90554 0.571568 0.98999 0.955528 3.180072 0.653221 1129.076904 487.529419 747.683044 653.766296 185.925949 11700 61.90554 0.964043 0.976021 0.980637 1.727034 0.460543 4481.425781 1464.382324 2567.036865 885.107483 168.31395 5400 61.90554 0.943316 0.924812 0.973099 5.063143 0.85842 1 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2714.782226 641.547485 3017.043457 0.018777342 0.019724173 0.021547307 0.951996437 0.871447278 0.915389222 -0.021364677 -0.059758882 -0.038394205
9 4510 22500 4260.416504 1749.147095 607.27533 1063.773804 145.3815 1200 71.812172 0.792812 0.986008 0.967346 4.005002 0.774077 1094.45459 453.882355 544.39032 542.151245 188.138428 9900 71.812172 0.963642 0.981667 0.987251 2.018726 0.538327 4353.4375 1812.485352 2194.854736 1195.094604 158.37558 3200 71.812172 0.845327 0.910782 0.96376 3.642756 0.822782 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2511.269409 640.572235 2540.952148 0.017369705 0.019694189 0.018147129 0.881971046 0.957159923 1.085250959 -0.054545672 -0.019015494 0.035530178
10 4770 22520 3310.214355 1306.75 853.931702 902.833313 172.424332 5600 85.282112 0.900788 0.978157 0.967773 3.666473 0.823523 1133.45459 448.573517 731.02655 680.002625 190.157852 13200 85.282112 0.972708 0.976395 0.981201 1.666839 0.44449 5250.243164 1620.720581 6368.841797 981.016418 166.984879 3700 85.282112 0.929221 0.703438 0.971527 5.35184 0.802292 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2003.464355 684.881073 3629.522583 0.013857368 0.02105645 0.025921549 0.658105603 0.534588735 0.812314518 -0.181704412 -0.271980197 -0.090275785
11 5020 22530 4420.6875 1555.794067 864.438477 957.384766 146.906143 1600 88.681427 0.886885 0.974594 0.970856 4.617462 0.787658 1002.626892 443.102936 632.386169 719.521973 187.630173 13400 88.681427 0.961473 0.980972 0.982246 1.393463 0.37159 3635.917969 1352.176514 908.920227 926.708008 177.33873 6100 88.681427 0.919153 0.972588 0.973282 3.923477 0.83118 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2864.893433 559.523956 2283.741455 0.019815617 0.017202386 0.016310166 1.151910982 1.214924312 1.054703298 0.061418919 0.084549223 0.023130304
12 5260 22530 3993.461426 1635.205933 691.860413 1029.863647 158.777039 2600 79.567963 0.888472 0.978523 0.971092 3.87766 0.821611 1153.129395 516.911743 612.122314 717.777588 181.42009 8500 79.567963 0.934824 0.98275 0.977951 1.606527 0.428407 4114.738281 1612.147095 1030.81543 987.801208 162.737167 4200 79.567963 0.895471 0.957565 0.969795 4.165553 0.837809 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2358.255493 636.217652 2502.591186 0.016311353 0.019560309 0.01787316 0.833900574 0.912617159 1.094395649 -0.078885727 -0.03971137 0.039174358
13 5510 22520 4186.95752 1420.205933 1078.24939 828.380676 173.34491 9400 75.760826 0.933496 0.971222 0.971222 5.054388 0.858244 1558.653809 421.102936 945.324524 559.880066 184.895889 15600 75.760826 0.953204 0.973206 0.987411 2.783907 0.742375 3980.955566 1603.794067 980.120117 1005.188965 158.977386 4500 75.760826 0.884764 0.964531 0.968086 3.960405 0.832226 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2766.751587 1137.550873 2377.161499 0.019136799 0.034973639 0.016977359 0.547177804 1.127195292 2.060016477 -0.261871528 0.051999166 0.313870694
14 5750 22540 4150.166504 1663.5 577.893188 989.919189 95.746155 600 76.086021 0.571989 0.988419 0.973236 4.19243 0.653701 1110.116699 432.897064 638.774841 552.568787 189.822784 12000 76.086021 0.972731 0.979675 0.983719 2.009011 0.535736 4439.9375 1749.176514 604.437073 993.429626 157.569595 1600 76.086021 0.862987 0.987427 0.966347 4.469302 0.787658 1 0 0 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 2486.666504 677.219635 2690.760986 0.017199534 0.020820902 0.019217043 0.826070542 0.895014577 1.083460226 -0.082982865 -0.048169892 0.034812973
15 6000 22530 3794 1560.176514 640.694763 1006.162781 166.60321 2000 70.694595 0.868636 0.978516 0.965561 3.770762 0.80124 818.735107 249.911758 787.246765 450.401855 190.826248 18500 70.694595 0.968248 0.974358 0.986961 1.817788 0.484743 4819.346191 1672.911743 1470.491089 940.172852 144.942947 2600 70.694595 0.817042 0.95105 0.974541 5.126021 0.821611 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2233.823486 568.823349 3146.434448 0.015450694 0.017488293 0.0224714 0.883487827 0.687571475 0.778246687 -0.05379943 -0.162682149 -0.108882719
16 6240 22540 3805.714355 1441.102905 1860.977051 931.233948 179.656982 4200 68.23304 0.92195 0.912231 0.973511 4.086744 0.835709 969.945129 371.808838 996.269348 597.802551 190.32518 16400 68.23304 0.96708 0.977875 0.985252 1.622518 0.432671 3875.952393 1541.735352 505.670013 916.299255 124.888702 2100 68.23304 0.810417 0.984917 0.971436 4.230007 0.804635 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2364.61145 598.136291 2334.217041 0.016355315 0.01838951 0.016670656 0.889382884 0.981084104 1.103106572 -0.050911233 -0.008293761 0.042617472
17 6500 22550 3691.766602 1598.308838 696.389709 1196.888306 180.364288 3000 82.34343 0.937867 0.982559 0.956108 3.08447 0.803323 1065.87854 389.25 919.73999 617.054871 187.460449 10700 82.34343 0.962446 0.974564 0.980995 1.727364 0.46063 4559.714355 1733.676514 754.432617 843.273499 111.70385 700 82.34343 0.650857 0.98291 0.976639 5.40716 0.743836 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2093.457764 676.62854 2826.037841 0.014479826 0.020802729 0.020183172 0.696054144 0.717420722 1.030696718 -0.157356976 -0.144226083 0.013130893
18 6750 22540 4183 1690.279419 467.507843 979.460327 139.80069 1500 76.086021 0.856077 0.98613 0.966911 4.270719 0.784263 995.13678 462.367645 521.765808 688.654175 189.319046 11700 76.086021 0.968227 0.984558 0.978302 1.445046 0.385346 4071 1467.985352 1184.069946 970.361145 156.149109 2600 76.086021 0.846638 0.964836 0.969101 4.195345 0.821611 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2492.720581 532.769135 2603.014648 0.017241408 0.016379817 0.018590371 1.05260075 0.927437546 0.881091474 0.022263675 -0.032715326 -0.054979001
19 2460 22700 4267.384766 1689.529419 899.236694 1024.86792 166.220642 2600 50.334148 0.903657 0.965508 0.969292 4.163839 0.821611 1797.666626 652.985291 634.161865 704.846313 179.302277 5400 50.334148 0.92304 0.981956 0.981094 2.550438 0.680117 4317 1616.911743 1230.026855 876.469238 167.1754 2800 50.334148 0.910808 0.962608 0.971848 4.925444 0.828402 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2577.855347 1144.681335 2700.088257 0.01783026 0.035192863 0.019283657 0.5066442 0.924630617 1.825009776 -0.295296925 -0.03403173 0.261265195
20 2720 22700 4050.833252 1836.867676 457.329041 953.055237 163.322906 3600 55.37925 0.928402 0.98613 0.96978 4.250366 0.840009 1855.967163 643.132324 672.636414 822.016296 182.12056 6100 55.37925 0.945303 0.978706 0.97876 2.257823 0.602086 4709.527832 1705.529419 1353.165771 899.095276 169.068726 3600 55.37925 0.922611 0.956985 0.9711 5.238074 0.855564 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2213.965576 1212.834839 3003.998413 0.015313342 0.037288221 0.021454142 0.410675063 0.713770922 1.738043007 -0.386501667 -0.146441149 0.240060519

Total number of rows: 5184

Table truncated, full table size 2750 Kbytes.




Supplementary data files not provided

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