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Sample GSM1218910 Query DataSets for GSM1218910
Status Public on Sep 01, 2014
Title Colorectal Normal Tissue-033112-01NB-Affymetrix Human Exon 1.0 ST
Sample type RNA
 
Source name Colorectal Normal Tissue
Organism Homo sapiens
Characteristics cell type: Adjacent Normal
gender: Male
age: 56
tissue: Sigmoid
tnm: T3N0M0
Stage: II
Treatment protocol not applicable
Growth protocol NONE (Tissue samples were used)
Extracted molecule total RNA
Extraction protocol RNA was isolated from <30mg of biopsy and surgery derived tissues using Macherey Nagel (Germany) Trio Kit. Both DNA and RNA were extracted in the same protocol accoding to manufacturers protocol.
Label Biotin
Label protocol Gene Chip WT Terminal Labelling and Controls Kit (cat # 951024) was procured from Affymetrix and used according the manufacturers protocol.
 
Hybridization protocol GeneChip® Hybridization Wash and Stain Kit (cat # 900720) was procured from Affymetrix and used according the manufacturers protocol.
Scan protocol The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000 7G.
Description RMA expression value derived from AltAnalyze; core-exon analysis
Data processing Data Processing using AltAnalyze Software. The default recommended settings by Altanalyze was used to analyze the data
 
Submission date Aug 28, 2013
Last update date Sep 01, 2014
Contact name Sathish Periyasamy
E-mail(s) sathish.periyasamy@gmail.com
Phone 0966503921073
Organization name NGHA
Department Bioinformatics
Street address P.O. Box 22490
City Riyadh
State/province Select a State or Province
ZIP/Postal code 11426
Country Saudi Arabia
 
Platform ID GPL5188
Series (1)
GSE50421 Exon Array Data for Colerectal Tumor and Normal Samples

Data table header descriptions
ID_REF
VALUE Gene expression values are calculated using constitutive probesets in AltAnalyze

Data table
ID_REF VALUE
2590411 6.20344
2609210 4.58718
2616957 7.06996
2391254 7.67273
3499280 4.45388
2807653 3.97405
2532280 8.63077
3842613 7.88328
3871433 8.90952
3087946 4.18632
3234450 2.59841
3452435 6.85444
2580386 4.13171
3949778 7.21634
2689727 5.39438
2846401 8.36872
2385421 3.66464
2992747 5.27268
3432063 7.16483
2827457 9.25176

Total number of rows: 1398555

Table truncated, full table size 21909 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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