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Sample GSM12522 Query DataSets for GSM12522
Status Public on Nov 03, 2003
Title tassel 8 h UV-B-2
Sample type RNA
 
Channel 1
Source name no UV-B exposed tassels
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name UV-B exposed tassels
Organism Zea mays
Extracted molecule total RNA
 
 
Description Microarray hybridization was used to assess UV-B responses in directly exposed and shielded maize tissues. In this experiment, emerging tassels were tested for UV-B transcriptome changes after 8 h exposure
 
Submission date Oct 29, 2003
Last update date May 28, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL498
Series (1)
GSE671 Rapid molecular responses of maize to UV-B: gene expression profiling in irradiated and shielded tissues

Data table header descriptions
ID_REF
VALUE log 2 on the intensities ratio
Ratio (M-N)/(J-K) ratio of intensities
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF VALUE Ratio (M-N)/(J-K) CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 0.869769603 1.827371048 2695 291 389 4723 330 505 156 1205 0 0.5472 0.5432 0.5503 0.9612 0.561 1 0.9808 0.9936 0.9551 0.1568 0.1648 0 0.9455 0.00E+00 0.8988 0.00E+00
2 0.85654721 1.810699588 2488 301 473 4293 333 684 156 1009 0 0.5523 0.5539 0.5376 0.9554 0.5493 1 1 1 1 0.138 0.1399 0 0.9208 0.00E+00 0.9035 0.00E+00
3 0.809481746 1.752581756 2611 287 411 4397 324 588 156 1001 0 0.5706 0.5518 0.5342 0.9589 0.5447 0.9872 1 0.9423 0.9808 0.1894 0.1769 0 0.8529 0.00E+00 0.8912 0.00E+00
4 762 275 324 1129 314 437 156 981 0 0.5975 0.6219 0.4963 0.8648 0.5312 0.9038 0.8718 0.7564 0.7564 0.2086 0.179 0 0.6836 0.00E+00 0.6613 0.00E+00
5 775 273 351 1131 316 427 156 987 0 0.616 0.631 0.5242 0.6643 0.7028 0.9295 0.891 0.7821 0.7821 0.2094 0.2078 0 0.7236 0.00E+00 0.6899 0.00E+00
6 804 277 375 1236 321 430 156 1008 0 0.576 0.5973 0.5897 0.6871 0.8012 0.9487 0.9103 0.859 0.8141 0.2231 0.1976 0 0.777 0.00E+00 0.7219 0.00E+00
7 0.431011135 1.348178138 9666 280 366 12974 320 413 156 1019 0 0.7417 0.7307 0.7343 0.9706 0.7504 0.9423 0.8974 0.8462 0.8141 0.3591 0.3395 0 0.7637 0.00E+00 0.7316 0.00E+00
8 0.455212102 1.370984349 9991 279 373 13633 318 404 156 1009 0 0.7294 0.7022 0.7115 0.9728 0.7253 0.9744 0.9615 0.8974 0.9038 0.3814 0.3622 0 0.8327 0.00E+00 0.833 0.00E+00
9 0.419001555 1.337001936 10091 278 377 13435 315 449 156 1001 0 0.7479 0.7331 0.7387 0.9608 0.7608 0.9551 0.9551 0.8846 0.8782 0.3755 0.3688 0 0.8013 0.00E+00 0.8044 0.00E+00
10 0.475885356 1.390771449 3055 281 438 4171 313 559 156 1019 0 0.719 0.6839 0.6891 0.8972 0.7458 0.9679 0.9808 0.9551 0.9231 0.2189 0.2299 0 0.8628 0.00E+00 0.8391 0.00E+00
11 0.54364016 1.457645765 3009 282 478 4288 313 656 156 1009 0 0.686 0.6894 0.5643 0.875 0.6084 0.9359 0.9487 0.891 0.9231 0.2478 0.2394 0 0.7455 0.00E+00 0.7915 0.00E+00
12 0.518433427 1.432399011 2701 275 504 3782 307 728 156 989 0 0.6981 0.7261 0.6197 0.9141 0.6549 0.9167 0.9038 0.8205 0.8397 0.227 0.2276 0 0.717 0.00E+00 0.7501 0.00E+00
13 0.0316524 1.022182218 50262 267 451 51408 304 604 156 991 0 0.9783 1.001 0.9552 0.983 0.9712 0.9936 1 0.9808 1 0.2591 0.2696 0 0.9235 0.00E+00 0.964 0.00E+00
14 0.122601793 1.088696476 46690 262 381 50847 301 413 156 1023 0 0.9185 0.9249 0.9315 0.9837 0.9461 1 0.9936 0.9936 0.9872 0.266 0.2882 0 0.972 0.00E+00 0.9421 0.00E+00
15 0.122541729 1.088651151 48211 259 440 52503 300 409 156 997 0 0.9186 0.9546 0.9405 0.9829 0.9561 1 1 1 0.9936 0.2556 0.278 0 0.9826 0.00E+00 0.9503 0.00E+00
16 0.597843792 1.513452915 4269 255 390 6375 300 382 156 1003 0 0.6607 0.6485 0.7024 0.9366 0.7359 0.9936 0.9744 0.9038 0.9167 0.3627 0.3713 0 0.8386 0.00E+00 0.8511 0.00E+00
17 0.753953663 1.686408054 3630 253 299 5993 298 369 156 1061 0 0.593 0.582 0.5848 0.966 0.5956 0.9744 0.9487 0.891 0.8654 0.3229 0.2972 0 0.8435 0.00E+00 0.812 0.00E+00
18 0.783921353 1.721804511 3584 259 390 6021 296 530 156 1016 0 0.5808 0.5857 0.5545 0.9291 0.5757 0.9679 0.9167 0.859 0.8526 0.284 0.2694 0 0.7803 0.00E+00 0.7699 0.00E+00
19 1.128527877 2.186355311 4628 260 423 9846 296 617 156 963 0 0.4574 0.4564 0.4373 0.9364 0.4473 1 1 1 1 0.1672 0.1618 0 0.9591 0.00E+00 0.9678 0.00E+00
20 1.197388032 2.293241086 4026 268 542 8917 299 841 156 1007 0 0.4361 0.4317 0.4237 0.9299 0.434 1 1 1 1 0.1399 0.1388 0 0.9275 0.00E+00 0.9384 0.00E+00

Total number of rows: 16928

Table truncated, full table size 2813 Kbytes.




Supplementary data files not provided

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