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Status
Public on Mar 16, 2004
Title
germ cells on STO day 5 GPL341
Sample type
RNA
Source name
germ cells from 22 day old rat testis, cultured for 5 days
Organism
Rattus norvegicus
Extracted molecule
total RNA
Description
50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 1.512). Keywords = Rat, testis, germ cells, stem cells, spermatogenesis
Submission date
Nov 10, 2003
Last update date
May 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
schultz@cbio.mskcc.org
Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL341
Series (1)
Data table header descriptions
ID_REF
Affymetrix probe id
VALUE
signal intensity
ABS_CALL
present (P), absent (A), marginal (M) call
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
569.2
P
0.001248
AFFX-BioB-M_at
1028
P
0.000044
AFFX-BioB-3_at
749.2
P
0.00007
AFFX-BioC-5_at
1632.3
P
0.000044
AFFX-BioC-3_at
987
P
0.000044
AFFX-BioDn-5_at
1209
P
0.000052
AFFX-BioDn-3_at
4392.1
P
0.000044
AFFX-CreX-5_at
14680.2
P
0.000044
AFFX-CreX-3_at
16977.7
P
0.000044
AFFX-DapX-5_at
14.5
A
0.250796
AFFX-DapX-M_at
24.1
A
0.175328
AFFX-DapX-3_at
2.6
A
0.949771
AFFX-LysX-5_at
3.1
A
0.60308
AFFX-LysX-M_at
9.9
A
0.631562
AFFX-LysX-3_at
2.5
A
0.39692
AFFX-PheX-5_at
22.4
A
0.544587
AFFX-PheX-M_at
1.8
A
0.910522
AFFX-PheX-3_at
16.2
A
0.5
AFFX-ThrX-5_at
2.5
A
0.883887
AFFX-ThrX-M_at
14.1
A
0.368438
Total number of rows: 15923 Table truncated, full table size 424 Kbytes .Supplementary file
Size
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File type/resource
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CEL