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Sample GSM12797 Query DataSets for GSM12797
Status Public on Mar 16, 2004
Title germ cells on STO day 5 GPL341
Sample type RNA
 
Source name germ cells from 22 day old rat testis, cultured for 5 days
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description 50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 1.512).
Keywords = Rat, testis, germ cells, stem cells, spermatogenesis
 
Submission date Nov 10, 2003
Last update date May 28, 2005
Contact name Nikolaus Schultz
E-mail(s) schultz@cbio.mskcc.org
Phone 646-888-2604
Organization name Memorial Sloan-Kettering Cancer Center
Department Computational Biology Center
Street address 1275 York Ave, Box 460
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL341
Series (1)
GSE830 Rat germ cells

Data table header descriptions
ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 569.2 P 0.001248
AFFX-BioB-M_at 1028 P 0.000044
AFFX-BioB-3_at 749.2 P 0.00007
AFFX-BioC-5_at 1632.3 P 0.000044
AFFX-BioC-3_at 987 P 0.000044
AFFX-BioDn-5_at 1209 P 0.000052
AFFX-BioDn-3_at 4392.1 P 0.000044
AFFX-CreX-5_at 14680.2 P 0.000044
AFFX-CreX-3_at 16977.7 P 0.000044
AFFX-DapX-5_at 14.5 A 0.250796
AFFX-DapX-M_at 24.1 A 0.175328
AFFX-DapX-3_at 2.6 A 0.949771
AFFX-LysX-5_at 3.1 A 0.60308
AFFX-LysX-M_at 9.9 A 0.631562
AFFX-LysX-3_at 2.5 A 0.39692
AFFX-PheX-5_at 22.4 A 0.544587
AFFX-PheX-M_at 1.8 A 0.910522
AFFX-PheX-3_at 16.2 A 0.5
AFFX-ThrX-5_at 2.5 A 0.883887
AFFX-ThrX-M_at 14.1 A 0.368438

Total number of rows: 15923

Table truncated, full table size 424 Kbytes.




Supplementary file Size Download File type/resource
GSM12797.CEL.gz 2.5 Mb (ftp)(http) CEL

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