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Sample GSM1312328 Query DataSets for GSM1312328
Status Public on Feb 15, 2014
Title lung_acute asthma_avg
Sample type RNA
 
Source name lung, acute asthma
Organism Mus musculus
Characteristics tissue: whole lung
strain: Balb/C
Treatment protocol Acute asthma was produced by immunization twice, one week apart, of Balb/C mice 8-12 weeks of age with Aspergillus species (5 μg) in adjuvant (1:1 vol/vol). Adjuvant was aluminum and magnesium hydroxide (Pierce). Asthma was initiated by three consecutive intranasal exposures to Aspergillus species (5μg in 15μL saline) and asthma was evaluated 72 hours after the final exposure. Tolerant asthma was produced by intranasal delivery of Aspergillus species (5μg in 15μL saline) twice a week for six consecutive weeks to Balb/C mice 8-12 weeks of age. Asthma was evaluated after mice were rested for an additional three weeks. Chronic asthma was produced by intranasal delivery of the Dustmite/ Ragweed/ Aspergillus (5,50,5ug in 15ul saline) mixture twice a week for six consecutive weeks in female mice Balb/C mice 8-12 weeks of age. Asthma was evaluated 3 weeks after cessation of allergen exposure. Saline control mice were treated intransally with 15ul of saline twice a week for 6 weeks. Asthma was assesed 3 weeks after the final exposure
Growth protocol Mice were allowed to eat and drink ad libitum
Extracted molecule total RNA
Extraction protocol Lungs were perfused with 0.9% saline and total RNA extracted according to Qiagen RNA extraction kit directions.
Label Cy5
Label protocol labeling, hybridization, scanning, and data processing were completed according to Phalanx Biotech protocols. See: http://www.phalanxbiotech.com/tech_support/MOAv2_UserGuide.pdf for technical details and http://www.phalanxbiotech.com/products/MOA.php for general information
 
Hybridization protocol labeling, hybridization, scanning, and data processing were completed according to Phalanx Biotech protocols. See: http://www.phalanxbiotech.com/tech_support/MOAv2_UserGuide.pdf for technical details and http://www.phalanxbiotech.com/products/MOA.php for general information
Scan protocol labeling, hybridization, scanning, and data processing were completed according to Phalanx Biotech protocols. See: http://www.phalanxbiotech.com/tech_support/MOAv2_UserGuide.pdf for technical details and http://www.phalanxbiotech.com/products/MOA.php for general information
Description mean normalized signal intensity
Data processing labeling, hybridization, scanning, and data processing were completed according to Phalanx Biotech protocols. See: http://www.phalanxbiotech.com/tech_support/MOAv2_UserGuide.pdf for technical details and http://www.phalanxbiotech.com/products/MOA.php for general information
 
Submission date Jan 22, 2014
Last update date Feb 15, 2014
Contact name Rafeul Alam
E-mail(s) AlamR@njhealth.org
Organization name National Jewish Health
Street address 1400 Jackson St. K609
City Denver
State/province CO
ZIP/Postal code 80206
Country USA
 
Platform ID GPL6845
Series (1)
GSE54297 Comparison of mouse genes from the lungs of chronic, acute, tolerant, and non-asthmatic mouse models

Data table header descriptions
ID_REF
VALUE mean normalized signal intensity

Data table
ID_REF VALUE
mMC000769 14.221549
mMC000770 4092.21069
mMC000771 50.652412
mMC000772 1450.79028
mMC000773 458.905304
mMC000774 376.439789
mMC000775 113.59771
mMC000776 13.58177
mMC000777 1111.78589
mMC000778 664.983826
mMC000779 273.501007
mMC000780 236.635117
mMC000781 13081.834
mMC000782 43.940109
mMC000783 37.473087
mMC000784 14.952734
mMC000785 70.512512
mMC000786 124.76902
mMC000787 7.689029
mMC000788 3238.94971

Total number of rows: 29922

Table truncated, full table size 591 Kbytes.




Supplementary file Size Download File type/resource
GSM1312328_acute_asthma_raw_data.xlsx.gz 1.3 Mb (ftp)(http) XLSX
Processed data included within Sample table

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