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Sample GSM1312329 Query DataSets for GSM1312329
Status Public on Feb 15, 2014
Title lung_saline_avg
Sample type RNA
 
Source name lung, control
Organism Mus musculus
Characteristics tissue: whole lung
strain: Balb/C
Treatment protocol Acute asthma was produced by immunization twice, one week apart, of Balb/C mice 8-12 weeks of age with Aspergillus species (5 μg) in adjuvant (1:1 vol/vol). Adjuvant was aluminum and magnesium hydroxide (Pierce). Asthma was initiated by three consecutive intranasal exposures to Aspergillus species (5μg in 15μL saline) and asthma was evaluated 72 hours after the final exposure. Tolerant asthma was produced by intranasal delivery of Aspergillus species (5μg in 15μL saline) twice a week for six consecutive weeks to Balb/C mice 8-12 weeks of age. Asthma was evaluated after mice were rested for an additional three weeks. Chronic asthma was produced by intranasal delivery of the Dustmite/ Ragweed/ Aspergillus (5,50,5ug in 15ul saline) mixture twice a week for six consecutive weeks in female mice Balb/C mice 8-12 weeks of age. Asthma was evaluated 3 weeks after cessation of allergen exposure. Saline control mice were treated intransally with 15ul of saline twice a week for 6 weeks. Asthma was assesed 3 weeks after the final exposure
Growth protocol Mice were allowed to eat and drink ad libitum
Extracted molecule total RNA
Extraction protocol Lungs were perfused with 0.9% saline and total RNA extracted according to Qiagen RNA extraction kit directions.
Label Cy5
Label protocol labeling, hybridization, scanning, and data processing were completed according to Phalanx Biotech protocols. See: http://www.phalanxbiotech.com/tech_support/MOAv2_UserGuide.pdf for technical details and http://www.phalanxbiotech.com/products/MOA.php for general information
 
Hybridization protocol labeling, hybridization, scanning, and data processing were completed according to Phalanx Biotech protocols. See: http://www.phalanxbiotech.com/tech_support/MOAv2_UserGuide.pdf for technical details and http://www.phalanxbiotech.com/products/MOA.php for general information
Scan protocol labeling, hybridization, scanning, and data processing were completed according to Phalanx Biotech protocols. See: http://www.phalanxbiotech.com/tech_support/MOAv2_UserGuide.pdf for technical details and http://www.phalanxbiotech.com/products/MOA.php for general information
Description mean normalized signal intensity
Data processing labeling, hybridization, scanning, and data processing were completed according to Phalanx Biotech protocols. See: http://www.phalanxbiotech.com/tech_support/MOAv2_UserGuide.pdf for technical details and http://www.phalanxbiotech.com/products/MOA.php for general information
 
Submission date Jan 22, 2014
Last update date Feb 15, 2014
Contact name Rafeul Alam
E-mail(s) AlamR@njhealth.org
Organization name National Jewish Health
Street address 1400 Jackson St. K609
City Denver
State/province CO
ZIP/Postal code 80206
Country USA
 
Platform ID GPL6845
Series (1)
GSE54297 Comparison of mouse genes from the lungs of chronic, acute, tolerant, and non-asthmatic mouse models

Data table header descriptions
ID_REF
VALUE mean normalized signal intensity

Data table
ID_REF VALUE
mMC000769 49.156632
mMC000770 5228.93604
mMC000771 64.661278
mMC000772 1915.03406
mMC000773 376.797424
mMC000774 535.885559
mMC000775 88.865456
mMC000776 8.756675
mMC000777 965.685547
mMC000778 932.421753
mMC000779 319.747223
mMC000780 262.835022
mMC000781 19958.2676
mMC000782 47.45306
mMC000783 48.418598
mMC000784 26.594566
mMC000785 42.942909
mMC000786 188.024033
mMC000787 13.949869
mMC000788 7340.83154

Total number of rows: 29922

Table truncated, full table size 592 Kbytes.




Supplementary file Size Download File type/resource
GSM1312329_saline_raw_data.xlsx.gz 1.3 Mb (ftp)(http) XLSX
Processed data included within Sample table

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