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Sample GSM1339627 Query DataSets for GSM1339627
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient R60 (U133A)
Sample type RNA
 
Source name synovial membrane patient R60 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 63
clinical status: rheumatoid arthritis
Treatment protocol NSAID, MTX
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R60
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) stiepet@t-online.de
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 389.9 P 0.003585
1053_at 186.6 P 0.001892
117_at 221.2 P 0.001602
121_at 877.6 P 0.011447
1255_g_at 66.9 A 0.150527
1294_at 317.9 P 0.001602
1316_at 111 P 0.017001
1320_at 116 A 0.127645
1405_i_at 594 P 0.001755
1431_at 35.8 A 0.081337
1438_at 250.6 P 0.011447
1487_at 509.7 P 0.02786
1494_f_at 223.2 P 0.019304
1598_g_at 3150.5 P 0.000219
160020_at 1820.6 P 0.001892
1729_at 645 P 0.001892
177_at 220.9 P 0.001141
1773_at 169 P 0.031336
179_at 504.4 A 0.107301
1861_at 220.8 P 0.003585

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.




Supplementary file Size Download File type/resource
GSM1339627_SynM-R60.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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