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Sample GSM1339630 Query DataSets for GSM1339630
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient R53 (U133A)
Sample type RNA
 
Source name synovial membrane patient R53 (osteoarthritis)
Organism Homo sapiens
Characteristics gender: female
age: 85
clinical status: osteoarthritis
Treatment protocol NSAID
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R53
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) stiepet@t-online.de
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 620.3 P 0.002617
1053_at 218 P 0.003585
117_at 151.8 P 0.021866
121_at 1462.5 P 0.003067
1255_g_at 136.8 P 0.035163
1294_at 391.8 P 0.001892
1316_at 171.8 P 0.007543
1320_at 203 P 0.043968
1405_i_at 58.8 P 0.015164
1431_at 48.6 A 0.07383
1438_at 256.5 M 0.060419
1487_at 760.5 P 0.021866
1494_f_at 282.3 P 0.02786
1598_g_at 3304.8 P 0.000322
160020_at 2234.6 P 0.001602
1729_at 470.5 P 0.007543
177_at 268.4 P 0.003585
1773_at 229.7 P 0.048995
179_at 1020.8 P 0.048995
1861_at 290.1 P 0.00418

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1339630_SynM-R53.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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