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| Status |
Public on Oct 01, 2006 |
| Title |
S-IIP(UIP)2_Cy5 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Universal Human Reference RNA (UHRR)
|
| Organism |
Homo sapiens |
| Characteristics |
Manufacturer: Stratagene;
Catalog number: 740000
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
Lung, Sporadic Idiopathic Interstitial Pneumonia (S-IIP), Usual Interstitial Pneumonia (UIP)
|
| Organism |
Homo sapiens |
| Characteristics |
Tissue: lung
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
Labeling, hybridization, and scanning done using Agilent reagents, hardware, and protocols
|
| Data processing |
Lowess normalization in Feature Extraction
|
| |
|
| Submission date |
Sep 05, 2006 |
| Last update date |
Sep 07, 2006 |
| Contact name |
Ivana V Yang |
| E-mail(s) |
yangi@njhealth.org
|
| Phone |
303-270-2589
|
| Fax |
303-270-2136
|
| Organization name |
National Jewish Health
|
| Department |
Medicine
|
| Street address |
1400 Jackson Street
|
| City |
Denver |
| State/province |
CO |
| ZIP/Postal code |
80206 |
| Country |
USA |
| |
|
| Platform ID |
GPL4255 |
| Series (1) |
| GSE5774 |
Gene Expression Profiling of Familial and Sporadic Cases of Interstitial Pneumonia |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
log-base2 ratio of sample over reference RNA |
| Cy3_SIG |
Cy3 signal reported as gDyeNormSignal by Agilent Feature Extraction Version 7.5.1 |
| Cy5_SIG |
Cy5 signal reported as rDyeNormSignal by Agilent Feature Extraction Version 7.5.1 |
| Data table |
| ID_REF |
VALUE |
Cy3_SIG |
Cy5_SIG |
| 1 |
null |
0 |
0 |
| 2 |
null |
0 |
0 |
| 3 |
-0.392631597 |
2577.55 |
1963.42 |
| 4 |
-0.308723689 |
409.615 |
330.705 |
| 5 |
0.072938658 |
435.717 |
458.312 |
| 6 |
0.127413111 |
937.69 |
1024.27 |
| 7 |
-5.434615694 |
6532.38 |
151.039 |
| 8 |
null |
0 |
0 |
| 9 |
-0.520206504 |
610.525 |
425.702 |
| 10 |
-0.030525604 |
450.697 |
441.261 |
| 11 |
0.048867854 |
281.08 |
290.764 |
| 12 |
1.302392538 |
424.915 |
1048 |
| 13 |
-0.035664076 |
121.225 |
118.265 |
| 14 |
null |
0 |
0 |
| 15 |
-0.88205615 |
31143.2 |
16898.1 |
| 16 |
1.73219066 |
190.33 |
632.337 |
| 17 |
-0.694377524 |
558.203 |
344.956 |
| 18 |
0.193678741 |
1185.93 |
1356.32 |
| 19 |
0.275974349 |
544.325 |
659.075 |
| 20 |
null |
0 |
0 |
Total number of rows: 43606
Table truncated, full table size 1314 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM134592.txt.gz |
9.9 Mb |
(ftp)(http) |
TXT |
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