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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 01, 2006 |
| Title |
S-IIP(UIP)4_Cy3 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Lung, Sporadic Idiopathic Interstitial Pneumonia (S-IIP), Usual Interstitial Pneumonia (UIP)
|
| Organism |
Homo sapiens |
| Characteristics |
Tissue: lung
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
Universal Human Reference RNA (UHRR)
|
| Organism |
Homo sapiens |
| Characteristics |
Manufacturer: Stratagene;
Catalog number: 740000
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
Labeling, hybridization, and scanning done using Agilent reagents, hardware, and protocols
|
| Data processing |
Lowess normalization in Feature Extraction
|
| |
|
| Submission date |
Sep 05, 2006 |
| Last update date |
Sep 07, 2006 |
| Contact name |
Ivana V Yang |
| E-mail(s) |
yangi@njhealth.org
|
| Phone |
303-270-2589
|
| Fax |
303-270-2136
|
| Organization name |
National Jewish Health
|
| Department |
Medicine
|
| Street address |
1400 Jackson Street
|
| City |
Denver |
| State/province |
CO |
| ZIP/Postal code |
80206 |
| Country |
USA |
| |
|
| Platform ID |
GPL4255 |
| Series (1) |
| GSE5774 |
Gene Expression Profiling of Familial and Sporadic Cases of Interstitial Pneumonia |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
log-base2 ratio of sample over reference RNA |
| Cy3_SIG |
Cy3 signal reported as gDyeNormSignal by Agilent Feature Extraction Version 7.5.1 |
| Cy5_SIG |
Cy5 signal reported as rDyeNormSignal by Agilent Feature Extraction Version 7.5.1 |
| Data table |
| ID_REF |
VALUE |
Cy3_SIG |
Cy5_SIG |
| 1 |
2.822463163 |
20268.6 |
2865.35 |
| 2 |
null |
0 |
0 |
| 3 |
-0.275395801 |
2229.11 |
2697.95 |
| 4 |
-0.303447962 |
331.983 |
409.697 |
| 5 |
-0.725057937 |
367.187 |
606.948 |
| 6 |
0.356453796 |
1712.88 |
1337.9 |
| 7 |
6.324402535 |
13421.4 |
167.48 |
| 8 |
null |
0 |
0 |
| 9 |
-0.142695706 |
497.961 |
549.732 |
| 10 |
null |
0 |
0 |
| 11 |
null |
0 |
0 |
| 12 |
0.494494648 |
501.658 |
356.082 |
| 13 |
null |
0 |
0 |
| 14 |
6.293170624 |
13473.3 |
171.807 |
| 15 |
-1.093243434 |
5980.46 |
12759.5 |
| 16 |
0.95224389 |
502.407 |
259.658 |
| 17 |
1.212610393 |
716.012 |
308.95 |
| 18 |
0.060558237 |
1567.86 |
1503.41 |
| 19 |
-0.546643121 |
370.832 |
541.668 |
| 20 |
null |
0 |
0 |
Total number of rows: 43606
Table truncated, full table size 1242 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM134596.txt.gz |
9.9 Mb |
(ftp)(http) |
TXT |
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