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Sample GSM135175 Query DataSets for GSM135175
Status Public on Jul 01, 2007
Title MEFF HP1gamma Biological Replicate 1
Sample type other
 
Channel 1
Source name HP1gamma chromatin immunoprecipitation (ChIP)
Organism Mus musculus
Characteristics 13.5dpc female mouse embryo fibroblast cell line (MEFF). The cells have a maternal deletion of the imprinted Igf2r cluster.
Extracted molecule other
Label Alexa 555
 
Channel 2
Source name Input DNA (whole cell extract)
Organism Mus musculus
Characteristics 13.5dpc female mouse embryo fibroblast cell line (MEFF). The cells have a maternal deletion of the imprinted Igf2r cluster.
Extracted molecule other
Label Alexa 647
 
 
Description The input and ChIP DNA were hybridized to the same microarray. Microarrays were scanned with a Genepix 4000B scanner (Axon Instruments).
Data processing The unnormalized values represent the log2 transformed 'Ratio of Medians' of each ID on the platform. To display the data, the average 'Ratio of Medians' was calculated for each PCR_FRAG_ID on the platform, then this single value was log2 transformed and plotted.
 
Submission date Sep 07, 2006
Last update date May 31, 2007
Contact name Denise P. Barlow
E-mail(s) denise.barlow@univie.ac.at
Organization name Center of Molecular Medicine (CeMM)
Department Austrian Academy of Sciences
Street address Dr. Bohrgasse 9/4
City Vienna
ZIP/Postal code 1030
Country Austria
 
Platform ID GPL4317
Series (1)
GSE5834 Active and repressive chromatin in the mammalian genome intersperse without spreading in imprinted gene clusters

Data table header descriptions
ID_REF
VALUE The log2 of the 'Ratio of Medians (Alexa 555/Alexa 647)'

Data table
ID_REF VALUE
1_1 -0.464
1_2 -0.954
1_3 -1
1_4 -0.631
1_5 -0.958
1_6 -1.182
1_7 -1.152
1_8 -0.737
928_1 -0.653
928_2 -0.903
928_3 -0.312
928_4 -0.324
928_5 -0.516
928_6 -0.36
928_7 -0.245
928_8 -0.485
1447_1 -1.273
1447_2 -0.947
1447_3 -1.205
1447_4 -0.805

Total number of rows: 3520

Table truncated, full table size 59 Kbytes.




Supplementary file Size Download File type/resource
GSM135175.txt.gz 489.4 Kb (ftp)(http) TXT

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