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Sample GSM136112 Query DataSets for GSM136112
Status Public on Oct 01, 2006
Title MamGland_WildType_Involuting_replicate2
Sample type RNA
 
Source name Mammary Gland
Organism Mus musculus
Characteristics Whole mammary gland No4 (inguinal) harvested from C57BL/6J female mouse at postlactational involution (4 days post weaning of pups).
Treatment protocol Excised tissue was placed in RNAlater (Ambion Inc) and kept at –80oC. RNA was isolated using Trizol (GibcoBRL).
Extracted molecule total RNA
Label ENZO biotin label
Label protocol Approximately 10 micrograms of total RNA was processed to produce biotinylated cRNA targets. Fragmented cRNA was prepared (10 micrograms) and hybridized overnight to MG-U74AV2 chip.
 
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description Wild type (C57BL/6J), whole mammary gland No4 from female mouse at postlactational involution.
Data processing MAS5.0
 
Submission date Sep 14, 2006
Last update date Sep 14, 2006
Contact name Juan F. Medrano
E-mail(s) jfmedrano@ucdavis.edu
Organization name University of California
Department Animal Science
Lab Animal Genomics-Medrano
Street address One Shields Ave
City Davis
State/province CA
ZIP/Postal code 95616-8521
Country USA
 
Platform ID GPL81
Series (1)
GSE5831 Analysis of the mammary gland transcriptome in wild type C57BL/6J mice

Data table header descriptions
ID_REF
VALUE Intensity
ABS_CALL Present, Absent, or Marginal

Data table
ID_REF VALUE ABS_CALL
AFFX-MurIL2_at 6.3 A
AFFX-MurIL10_at 8.5 A
AFFX-MurIL4_at 8.3 A
AFFX-MurFAS_at 40.8 P
AFFX-BioB-5_at 69.6 P
AFFX-BioB-M_at 107.4 P
AFFX-BioB-3_at 57.3 P
AFFX-BioC-5_at 208.8 P
AFFX-BioC-3_at 122.7 P
AFFX-BioDn-5_at 137.1 P
AFFX-BioDn-3_at 1223.1 P
AFFX-CreX-5_at 2009.1 P
AFFX-CreX-3_at 3178.7 P
AFFX-BioB-5_st 44 A
AFFX-BioB-M_st 5.7 A
AFFX-BioB-3_st 8 A
AFFX-BioC-5_st 10 A
AFFX-BioC-3_st 3.9 A
AFFX-BioDn-5_st 33.7 A
AFFX-BioDn-3_st 56 A

Total number of rows: 12488

Table truncated, full table size 206 Kbytes.




Supplementary file Size Download File type/resource
GSM136112.CEL.gz 2.7 Mb (ftp)(http) CEL

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