|
Status |
Public on Apr 03, 2014 |
Title |
Albert_healthy |
Sample type |
SRA |
|
|
Source name |
Cassava cv Albert leaf tissue
|
Organism |
Manihot esculenta |
Characteristics |
infection: non infected cultivar: Albert tissue: leaf
|
Treatment protocol |
CBSV was graft inoculate on two month old plants
|
Growth protocol |
Plant grown for 14 months
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNAS were extracted using CTAB methods and concentrated using Rneasy mini-elute kit RNA libraries were prepared for sequencing using standard Illumina protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
Sequenced reads were trimmed for adaptor sequence, and quality filitered mapped to the genome Cassava 4.1 using BWA aligner Genome_build: Cassava4.1 from www.phytozyme.net Supplementary_files_format_and_content: each tab-delimited text files include gene id and RPKM values
|
|
|
Submission date |
Apr 02, 2014 |
Last update date |
May 15, 2019 |
Contact name |
sophie BOUVAINE |
E-mail(s) |
bs33@gre.ac.uk
|
Phone |
01634883237
|
Organization name |
Natural resources Institute
|
Street address |
Central Avenue
|
City |
Chatham Maritime |
State/province |
kent |
ZIP/Postal code |
ME4 4BJ |
Country |
United Kingdom |
|
|
Platform ID |
GPL17194 |
Series (1) |
GSE56467 |
Transcriptional response of virus-infected cassava and identification of putative sources of resistance for cassava brown streak disease |
|
Relations |
BioSample |
SAMN02716078 |
SRA |
SRX507960 |