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Sample GSM1361949 Query DataSets for GSM1361949
Status Public on Apr 03, 2014
Title Albert_healthy
Sample type SRA
 
Source name Cassava cv Albert leaf tissue
Organism Manihot esculenta
Characteristics infection: non infected
cultivar: Albert
tissue: leaf
Treatment protocol CBSV was graft inoculate on two month old plants
Growth protocol Plant grown for 14 months
Extracted molecule total RNA
Extraction protocol Total RNAS were extracted using CTAB methods and concentrated using Rneasy mini-elute kit
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Data processing Sequenced reads were trimmed for adaptor sequence, and quality filitered
mapped to the genome Cassava 4.1 using BWA aligner
Genome_build: Cassava4.1 from www.phytozyme.net
Supplementary_files_format_and_content: each tab-delimited text files include gene id and RPKM values
 
Submission date Apr 02, 2014
Last update date May 15, 2019
Contact name sophie BOUVAINE
E-mail(s) bs33@gre.ac.uk
Phone 01634883237
Organization name Natural resources Institute
Street address Central Avenue
City Chatham Maritime
State/province kent
ZIP/Postal code ME4 4BJ
Country United Kingdom
 
Platform ID GPL17194
Series (1)
GSE56467 Transcriptional response of virus-infected cassava and identification of putative sources of resistance for cassava brown streak disease
Relations
BioSample SAMN02716078
SRA SRX507960

Supplementary file Size Download File type/resource
GSM1361949_NG-6080_Albert_control.txt.gz 504.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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