|
| Status |
Public on Oct 01, 2014 |
| Title |
1235A_INV |
| Sample type |
genomic |
| |
|
| Source name |
microdissected ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: LGSC
component: Invasive
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total genomic DNA was extracted using a DNeasy Kit (Qiagen, Valencia, CA)
|
| Label |
Cy3,Cy5
|
| Label protocol |
Infinium HD Assay was performed according to the manufacturer's instructions (Illumina)
|
| |
|
| Hybridization protocol |
Infinium HD Assay was performed using the BeadArray system according to the manufacturer's instructions (Illumina)
|
| Scan protocol |
Infinium HD Assay was performed using the BeadArray system according to the manufacturer's instructions (Illumina)
|
| Description |
Raw data file: ILOE-5627_Reanalyzed_FullDataTable.txt
Sample name: 65678
AlternateIDRawData: 1235A_INV
dual-color florescent staining
|
| Data processing |
Data was extracted using Illumina’s GenomeStudio v2010.3 with Genotyping module 1.8.4 software, with the default Illumina settings and Illumina HumanOmniExpress‐12v1_H manifest cluster file
|
| |
|
| Submission date |
May 05, 2014 |
| Last update date |
Oct 01, 2014 |
| Contact name |
Dariush Etemadmoghadam |
| E-mail(s) |
dariush.etemadmoghadam@petermac.org
|
| Phone |
61396561149
|
| Organization name |
Peter MacCallum Cancer Centre
|
| Street address |
St Andrew's Place
|
| City |
East Melbourne |
| ZIP/Postal code |
3002 |
| Country |
Australia |
| |
|
| Platform ID |
GPL13135 |
| Series (2) |
| GSE57270 |
Genomic analysis of low-grade serous ovarian carcinomas [ILOE] |
| GSE57280 |
Genomic analysis of low-grade serous ovarian carcinomas |
|
