|
| Status |
Public on Oct 01, 2014 |
| Title |
A7.5074_INV |
| Sample type |
genomic |
| |
|
| Source name |
microdissected FFPE ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
patient: A7.5074
disease state: LGSC
component: Invasive
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from deparaffinized sections of formalin-fixed paraffin embedded (FFPE) specimens using a modified protocol of the QIAmp DNA FFPE Tissue kit (Qiagen). The Infinium HD FFPE DNA Restore Kit (Illumina) was used to repair degraded DNA samples in preparation for use with the Infinium HD Assay.
|
| Label |
Cy3,Cy5
|
| Label protocol |
Infinium HD Assay was performed according to the manufacturer's instructions (Illumina)
|
| |
|
| Hybridization protocol |
Infinium HD Assay was performed using the BeadArray system according to the manufacturer's instructions (Illumina)
|
| Scan protocol |
Infinium HD Assay was performed using the BeadArray system according to the manufacturer's instructions (Illumina)
|
| Description |
Raw data file: ILOEF-6561_FullDataTable.txt
Sample name: 65665_INV
AlternateIDRawData: A7.5074_INV
dual-color florescent staining
|
| Data processing |
Data was extracted using Illumina’s GenomeStudio v2010.3 with Genotyping module 1.8.4 software, with the default Illumina settings and Illumina HumanOmniExpress‐12v1_G_FFPE manifest cluster file
|
| |
|
| Submission date |
May 05, 2014 |
| Last update date |
Oct 01, 2014 |
| Contact name |
Dariush Etemadmoghadam |
| E-mail(s) |
dariush.etemadmoghadam@petermac.org
|
| Phone |
61396561149
|
| Organization name |
Peter MacCallum Cancer Centre
|
| Street address |
St Andrew's Place
|
| City |
East Melbourne |
| ZIP/Postal code |
3002 |
| Country |
Australia |
| |
|
| Platform ID |
GPL18643 |
| Series (2) |
| GSE57276 |
Genomic analysis of low-grade serous ovarian carcinomas [ILOEF] |
| GSE57280 |
Genomic analysis of low-grade serous ovarian carcinomas |
|
