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Sample GSM139480 Query DataSets for GSM139480
Status Public on Oct 10, 2007
Title whole brain_chinook_fall
Sample type SAGE
Anchor NlaIII
Tag Count 28202
Tag Length 17
 
Source name whole brain_chinook_fall
Organism Oncorhynchus tshawytscha
Characteristics Sample: Caught in the Feather River, CA, Fall, 2004
Sex: Female
Tissue: whole brain tissue
Extracted molecule total RNA
Extraction protocol Trizol RNA extraction of whole brains. SAGE libraries constructed with 10ug total RNA
 
Description 1 of 3 Chinook salmon SAGE libraries
 
Submission date Oct 10, 2006
Last update date Nov 19, 2008
Contact name Jeremiah Bernier
E-mail(s) jbernier2@yahoo.com
Phone (541) 867-0420
Organization name Hatfield Marine Science Center, Oregon State University
Department Fisheries and Wildlife
Lab Marine Fisheries Genetic Laboratory
Street address 2030 SE Marine Science Drive
City Newport
State/province OR
ZIP/Postal code 97365
Country USA
 
Platform ID GPL4407
Series (1)
GSE6009 Long Serial Analysis of Gene Expression (LongSAGE) of Chinook salmon (Oncorhynchus tshawytscha) brain tissue.

Data table header descriptions
TAG 17 bp tag w/o CATG anchoring site
COUNT number of times counted in FALL library
TPM tags per million

Data table
TAG COUNT TPM
GAATGAAATATCAACTG 1 35.46
AATGTAGAATTGTTAAG 1 35.46
TTCTTTATCTCGTGATG 1 35.46
TTGCATTACGTACAGCA 1 35.46
TTACCAATCAACAACAA 1 35.46
ATAAATGCATTGATTTG 1 35.46
GGCATTTTTACCAACCA 1 35.46
TTTATACTAAAAGAAAA 1 35.46
TTATTGCAGAATTATTT 1 35.46
TTTATCAGACTGAAACA 1 35.46
GTTTATTTATTTTAACT 1 35.46
TACTGAGCAATTTTAAT 1 35.46
GCTCATCCCAAAGATTT 1 35.46
GTTGTGTTCACGATGGA 1 35.46
AGTCTGTCATCCAAGCT 1 35.46
ACAGTGTTTCAGTCTGT 1 35.46
GATCGTGTCATCACGCA 1 35.46
ATCAATTTATCTCTCAA 1 35.46
TGTGAACTAACTCAAAT 1 35.46
CCTGAGTCTGCCAACAC 1 35.46

Total number of rows: 8054

Table truncated, full table size 206 Kbytes.




Supplementary data files not provided

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